| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G65210.1 |
| Family | PL4 |
| Protein Properties | Length: 249 Molecular Weight: 28633.4 Isoelectric Point: 10.0626 |
| Chromosome | Chromosome/Scaffold: 1 Start: 24224812 End: 24225815 |
| Description | rhamnogalacturonate lyase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 63 | 231 | 0 |
| HQRAREYFVPEPYKNTMNPLYLNHTDKFRQYGLWQRYTELYPNHDLIYTIGVSNYSKDWFYSQVTRKIGDSTYTPTTWQTVFHLPYVNMRGSYTLQLALA SAAWANLQVRFNNEYTRPFFSTGYIGRDNAIARHGIHGLYRLYSINVPGRLLRTGTNTIYLRQAKASGP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 249 Download |
| MSKPIRNLDG PSGRAPTVQQ IRNKHGTREV IVDNGIISVS FSSPQGLITG IKYKGVNNVL 60 HPHQRAREYF VPEPYKNTMN PLYLNHTDKF RQYGLWQRYT ELYPNHDLIY TIGVSNYSKD 120 WFYSQVTRKI GDSTYTPTTW QTVFHLPYVN MRGSYTLQLA LASAAWANLQ VRFNNEYTRP 180 FFSTGYIGRD NAIARHGIHG LYRLYSINVP GRLLRTGTNT IYLRQAKASG PLEGVMYDYI 240 RLEEPSRE* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam06045 | Rhamnogal_lyase | 1.0e-12 | 22 | 67 | 46 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| cd10317 | RGL4_C | 9.0e-45 | 65 | 243 | 181 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003674 | molecular_function |
| GO:0005575 | cellular_component |
| GO:0008150 | biological_process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAD94618.1 | 0 | 62 | 247 | 324 | 509 | LG127/30 like gene [Arabidopsis thaliana] |
| EMBL | CAB37543.1 | 3e-24 | 3 | 67 | 26 | 91 | LG127/30 like gene [Arabidopsis thaliana] |
| EMBL | CAB37543.1 | 0 | 62 | 247 | 463 | 648 | LG127/30 like gene [Arabidopsis thaliana] |
| RefSeq | NP_176700.1 | 0 | 1 | 248 | 1 | 248 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_195516.2 | 0 | 62 | 247 | 481 | 666 | lyase [Arabidopsis thaliana] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DK560847 | 185 | 62 | 245 | 0 |
| GR828587 | 185 | 62 | 245 | 0 |
| EG486176 | 189 | 62 | 249 | 0 |
| FS592316 | 185 | 62 | 245 | 0 |
| EE260349 | 190 | 62 | 249 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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