| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G65570.1 |
| Family | GH28 |
| Protein Properties | Length: 398 Molecular Weight: 42717.7 Isoelectric Point: 6.4968 |
| Chromosome | Chromosome/Scaffold: 1 Start: 24374098 End: 24375846 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 55 | 386 | 0 |
| DAACGVEDSVVIYVPKGRYLVSGEVRFEGESCKSREITLRIDGTLIGPQDYSLLGKKENWFSFSGVHNVTVLGGSFDAKGSTLWSCKANGYNCPEGATTL RFMDSNNVKIKGVLSLNSQLFHIAINRCRNIKIEDVRIIAPDESPNTDGIHIQLSTDIEVRNASIKTGDDCISIGPGTKNLMVDGITCGPGHGISIGSLA KSIEEQGVENVTVKNAVFVRTDNGLRIKSWPRHSNGFVERVRFLGAIMVNVSYPILIDQNYCPGDSSCPSQESGIKINDVIYSGIMGTSATEIAIKMDCS EKVPCTGIRMQAINLTSYGEAAKTSCTNVSGK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 398 Download |
| MALFLSFVQV FSIVITIIMS HFGQFDARTS LNVLSFGANP NGIVESAKAF SDAWDAACGV 60 EDSVVIYVPK GRYLVSGEVR FEGESCKSRE ITLRIDGTLI GPQDYSLLGK KENWFSFSGV 120 HNVTVLGGSF DAKGSTLWSC KANGYNCPEG ATTLRFMDSN NVKIKGVLSL NSQLFHIAIN 180 RCRNIKIEDV RIIAPDESPN TDGIHIQLST DIEVRNASIK TGDDCISIGP GTKNLMVDGI 240 TCGPGHGISI GSLAKSIEEQ GVENVTVKNA VFVRTDNGLR IKSWPRHSNG FVERVRFLGA 300 IMVNVSYPIL IDQNYCPGDS SCPSQESGIK INDVIYSGIM GTSATEIAIK MDCSEKVPCT 360 GIRMQAINLT SYGEAAKTSC TNVSGKQLGL VTPSGCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-81 | 58 | 383 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 5.0e-84 | 14 | 393 | 386 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-88 | 31 | 397 | 374 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 4.0e-93 | 5 | 396 | 407 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 7.0e-128 | 11 | 397 | 388 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28449.1 | 0 | 21 | 397 | 21 | 397 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_176735.1 | 0 | 21 | 397 | 21 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002262690.1 | 0 | 32 | 397 | 33 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002315106.1 | 0 | 3 | 397 | 4 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 27 | 397 | 19 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-23 | 90 | 383 | 35 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-23 | 90 | 383 | 35 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-23 | 90 | 383 | 35 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-23 | 90 | 383 | 35 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-23 | 90 | 383 | 35 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
