y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT1G67750.1 |
Family | PL1 |
Protein Properties | Length: 409 Molecular Weight: 44885.9 Isoelectric Point: 8.6551 |
Chromosome | Chromosome/Scaffold: 1 Start: 25401588 End: 25403503 |
Description | pectate lyase precursor, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 123 | 327 | 0 |
QDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKRKGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDH CSLSNCADGLIDAIHGSTAITISNNYLSHHNKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINSQG NRFLA |
Full Sequence |
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Protein Sequence Length: 409 Download |
MRMTLVHLSL SLFSCLLLVL SPTFIASTPV SEPELVVQEV NEKINASRRN LGVLSCGTGN 60 PIDDCWRCDP KWEKNRQRLA DCAIGFGKHA IGGRDGKIYV VTDSSDKDVV NPKPGTLRHA 120 VIQDEPLWII FARDMVIKLK EELIMNSFKT IDGRGASVHI AGGACITVQY VTNIIIHGVN 180 IHDCKRKGNA YVRDSPSHYG WRTASDGDAV SIFGGSHVWV DHCSLSNCAD GLIDAIHGST 240 AITISNNYLS HHNKVMLLGH SDSYTRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN 300 DYTHWQMYAI GGSAAPTINS QGNRFLAPND HVFKEVTKYE DAPRSKWKKW NWRSEGDLFL 360 NGAFFTPSGG GASSSYAKAS SLSARPSSLV ASVTSNAGAL FCRKGSRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-25 | 147 | 325 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-71 | 140 | 325 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-80 | 134 | 329 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0008150 | biological_process |
GO:0012505 | endomembrane system |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG28907.1 | 0 | 35 | 408 | 19 | 392 | AC008113_23 F12A21.12 [Arabidopsis thaliana] |
GenBank | AAM67091.1 | 0 | 3 | 408 | 1 | 406 | putative pectate lyase [Arabidopsis thaliana] |
EMBL | CBI14899.1 | 0 | 22 | 408 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_564906.1 | 0 | 1 | 408 | 1 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002275781.1 | 0 | 22 | 408 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 60 | 400 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 60 | 400 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-17 | 129 | 327 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000002 | 189 | 399 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000002 | 189 | 399 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |