| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G70500.1 |
| Family | GH28 |
| Protein Properties | Length: 469 Molecular Weight: 50900.4 Isoelectric Point: 5.4251 |
| Chromosome | Chromosome/Scaffold: 1 Start: 26566579 End: 26568729 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 93 | 421 | 0 |
| ACSAPNSVLLVPQGRSYLVNATKFDGPCQEKLIIQIDGTIIAPDEPSQWDPKFPRNWLQFSKLQGVVFQGNGVIDGSGTKWWAASCKKNKSNPCVGAPTA LTIYSSSNVYVRGLTIRNSQQMHLIIQRSTTVRISRVMVTSPGDSPNTDGIHITASTDVVVQDSKISTGDDCVSIVNGSAKIKMKRIYCGPGHGISIGSL GQGHSKGTVTAVVLETAFLKNTTNGLRIKTWQGGNGYVKGVRFENVVMQDVANPIIIDQFYCDSPSTCQNQTSAVHISEIMYRNITGTTKSSKAINFKCS DAVPCSHIVLNNINLEGNDGKVEAYCNSA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 469 Download |
| MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ 60 YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV LLVPQGRSYL VNATKFDGPC 120 QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK 180 NKSNPCVGAP TALTIYSSSN VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT 240 DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT 300 VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC 360 QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI VLNNINLEGN DGKVEAYCNS 420 AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-88 | 68 | 423 | 360 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-89 | 61 | 412 | 355 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-99 | 94 | 421 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-116 | 67 | 431 | 368 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-142 | 62 | 433 | 374 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC98004.1 | 0 | 15 | 468 | 15 | 457 | Similar to gb |
| RefSeq | NP_173760.2 | 0 | 15 | 468 | 16 | 460 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_177207.1 | 0 | 1 | 468 | 1 | 468 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002299032.1 | 0 | 19 | 468 | 18 | 469 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525360.1 | 0 | 1 | 465 | 1 | 496 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-23 | 162 | 388 | 115 | 344 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 9e-21 | 166 | 418 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 9e-21 | 166 | 418 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 9e-21 | 166 | 418 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 9e-21 | 166 | 418 | 80 | 328 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
