| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G78400.1 |
| Family | GH28 |
| Protein Properties | Length: 405 Molecular Weight: 44118.8 Isoelectric Point: 10.2559 |
| Chromosome | Chromosome/Scaffold: 1 Start: 29498281 End: 29499682 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 59 | 389 | 0 |
| KDACQWKGLPRVYIPFGTFYLGAVAFTGPCKSRISFIIKGTLLAPKDPNAIKQDSWIIFRYVDYLTVSGGGILDGQGSYSWPLNNCRQTHNCRALPMNMG FQFVRFSRLTRIKSINSKMGHLNFFSVQHFDITRVNIKAPGDSPNTDGIKIGSSNHMKIHHVDIATGDDCIAILSGTFNLDINKVNCGPGHGISVGSLGK FKGEKSVQGLIVRNSIFNGTSNGVRIKTWPSPGEPNLVSNFLFKNLQMIDVQSPINIDQRYCPNPPCSFQSFSKIQIRDVKFQNIWGTSTAKEAVKLQCS KNVPCKNVQLFNINIVHRGRDGPATSVCENV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 405 Download |
| MVSTISGFSL ILFIAAVASS ISAAPSAALV GRKVFDVRSY GARGDGKTDN TMAFTKAWKD 60 ACQWKGLPRV YIPFGTFYLG AVAFTGPCKS RISFIIKGTL LAPKDPNAIK QDSWIIFRYV 120 DYLTVSGGGI LDGQGSYSWP LNNCRQTHNC RALPMNMGFQ FVRFSRLTRI KSINSKMGHL 180 NFFSVQHFDI TRVNIKAPGD SPNTDGIKIG SSNHMKIHHV DIATGDDCIA ILSGTFNLDI 240 NKVNCGPGHG ISVGSLGKFK GEKSVQGLIV RNSIFNGTSN GVRIKTWPSP GEPNLVSNFL 300 FKNLQMIDVQ SPINIDQRYC PNPPCSFQSF SKIQIRDVKF QNIWGTSTAK EAVKLQCSKN 360 VPCKNVQLFN INIVHRGRDG PATSVCENVG GWIGGKISPP SCIR* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-82 | 37 | 399 | 369 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 1.0e-86 | 34 | 403 | 372 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-89 | 62 | 389 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 8.0e-90 | 32 | 402 | 379 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-117 | 35 | 400 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71796.1 | 0 | 1 | 404 | 1 | 412 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
| RefSeq | NP_173158.1 | 0 | 7 | 403 | 11 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175003.1 | 0 | 1 | 403 | 4 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_177961.2 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_180874.1 | 0 | 9 | 402 | 13 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000000003 | 105 | 368 | 93 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000001 | 123 | 346 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000001 | 123 | 346 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000001 | 123 | 346 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000001 | 123 | 346 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
