| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G80140.1 |
| Family | GH28 |
| Protein Properties | Length: 337 Molecular Weight: 36045 Isoelectric Point: 6.3333 |
| Chromosome | Chromosome/Scaffold: 1 Start: 30146611 End: 30148180 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 3 | 324 | 0 |
| SVNVPAGKVFLLNSLHFTGPCIPKPLLFIIDGEMIAQSDPQKWGNGENGVIPWLIFDQVDGLAIVGRGLLDGQGKSWWDIHCRDHPGPMMTFSNCGNVTL KSLRFRNSAQTHVLVMGSQNVYIDDIKITSPEASPNTDGIHITSSTAVSINHSDIATGDDCVSIGDQVNNLNVTFMNCGPGHGVSIGSLGRGGTEVTVEN IRVSHVNFTGTTNGARIKTWPGGTGYVRGIEFFDIRFSSVQNPIIIDQFYGCAPTCVETMKGVHIEKVRYMKMSGTSATKVAMKLECSGESVPCSNLFMR DIDLSPADGIDSVSSLCSFAHG | |||
| Full Sequence |
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| Protein Sequence Length: 337 Download |
| MGSVNVPAGK VFLLNSLHFT GPCIPKPLLF IIDGEMIAQS DPQKWGNGEN GVIPWLIFDQ 60 VDGLAIVGRG LLDGQGKSWW DIHCRDHPGP MMTFSNCGNV TLKSLRFRNS AQTHVLVMGS 120 QNVYIDDIKI TSPEASPNTD GIHITSSTAV SINHSDIATG DDCVSIGDQV NNLNVTFMNC 180 GPGHGVSIGS LGRGGTEVTV ENIRVSHVNF TGTTNGARIK TWPGGTGYVR GIEFFDIRFS 240 SVQNPIIIDQ FYGCAPTCVE TMKGVHIEKV RYMKMSGTSA TKVAMKLECS GESVPCSNLF 300 MRDIDLSPAD GIDSVSSLCS FAHGSAQGII RPLSCF* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-70 | 2 | 332 | 342 | + polygalacturonase ADPG | ||
| PLN03010 | PLN03010 | 1.0e-74 | 6 | 311 | 309 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 7.0e-75 | 2 | 309 | 311 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-77 | 4 | 326 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-80 | 3 | 336 | 344 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55472.1 | 0 | 1 | 336 | 31 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
| EMBL | CBI15273.1 | 0 | 5 | 332 | 63 | 383 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36307.1 | 0 | 6 | 336 | 69 | 402 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_178131.1 | 0 | 1 | 336 | 1 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267182.1 | 0 | 5 | 332 | 63 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-22 | 66 | 252 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 7e-18 | 71 | 307 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 7e-18 | 71 | 307 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 7e-18 | 71 | 307 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 7e-18 | 71 | 307 | 79 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT769246 | 252 | 92 | 332 | 0 |
| DT746124 | 247 | 97 | 332 | 0 |
| DT768232 | 242 | 102 | 332 | 0 |
| DR050772 | 298 | 27 | 306 | 0 |
| JZ191937 | 309 | 35 | 336 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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