| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT1G80170.1 |
| Family | GH28 |
| Protein Properties | Length: 445 Molecular Weight: 48171.7 Isoelectric Point: 8.3845 |
| Chromosome | Chromosome/Scaffold: 1 Start: 30153408 End: 30155713 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 77 | 410 | 0 |
| KTACSSKVKTRILVPENYTCLLRPIDLSGPCKARLTLQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGGGTVNGMGQEWWERSCKHNHSNPCRGA PTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNTTVSTGDDCISIVKNSTQISISNIICGPGHGISI GSLGKSKSWEEVRDITVDTAIISDTANGVRIKTWQGGSGLVSKIIFRNIKMNNVSNPIIIDQYYCDSRKPCANQTSAISIENISFVHVRGTSASKEAIKI SCSDSSPCRNILLQDIDLEPSNGDGFTESFCWEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA 60 KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP IDLSGPCKAR LTLQISGTII 120 APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL 180 TFHKCKNMRV ENLNVIDSQQ MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI 240 DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD 300 TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS 360 FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD GFTESFCWEA YGSSSGQVYP 420 PPCLSDDTSF LEQSVQSGIT SAYL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-84 | 54 | 430 | 380 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-91 | 52 | 423 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-93 | 80 | 395 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-105 | 55 | 395 | 343 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 0 | 52 | 444 | 393 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009505 | plant-type cell wall |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD55489.1 | 0 | 1 | 444 | 1 | 459 | AC009322_29 Similar to polygalacturonases [Arabidopsis thaliana] |
| GenBank | ABM67700.1 | 0 | 1 | 439 | 4 | 440 | polygalacturonase [Citrus sinensis] |
| RefSeq | NP_565232.1 | 0 | 1 | 444 | 1 | 444 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002299601.1 | 0 | 31 | 443 | 30 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517603.1 | 0 | 30 | 437 | 11 | 418 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 1e-22 | 143 | 382 | 69 | 320 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1bhe_A | 4e-22 | 147 | 340 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 2e-21 | 71 | 386 | 9 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-21 | 71 | 386 | 9 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-21 | 71 | 386 | 9 | 311 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
