| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT2G15470.1 |
| Family | GH28 |
| Protein Properties | Length: 405 Molecular Weight: 44102.3 Isoelectric Point: 8.5334 |
| Chromosome | Chromosome/Scaffold: 2 Start: 6754330 End: 6756051 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 57 | 390 | 0 |
| ACKRISGSSKIYVPKGTFYLGGVEFVGLCKNPIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCPKLAMTMGF AFVNNSNIKDITSLNSKMGHFNFFSVHHFNITGVTITAPGDSPNTDGIKMGSCSNIQISDTNIGTGDDCIAILSGTTNLNISNVNCGPGHGISVGSLGKN KDEKDAKDLIVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDVGKPINIDQKYCPHPPCEHERKGESHVQIQNLKLKNIYGTSKNKVAMNLQC SKIFPCKNVELIDINIKQNGVKDGSSTSVCENVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 405 Download |
| MACISFAFKA LCFCLFFIVV ASRSTVRPKV FNVQRHGAKP DGKTDNANAF TSIWSRACKR 60 ISGSSKIYVP KGTFYLGGVE FVGLCKNPIE FIIDGTLLAP ANPSDIKQDT WINFRYINNL 120 SISGSGTLDG QGKQSWPHND CHTNPNCPKL AMTMGFAFVN NSNIKDITSL NSKMGHFNFF 180 SVHHFNITGV TITAPGDSPN TDGIKMGSCS NIQISDTNIG TGDDCIAILS GTTNLNISNV 240 NCGPGHGISV GSLGKNKDEK DAKDLIVRDV IFNGTSDGIR IKTWESSASK ILVSNFVYEN 300 IQMIDVGKPI NIDQKYCPHP PCEHERKGES HVQIQNLKLK NIYGTSKNKV AMNLQCSKIF 360 PCKNVELIDI NIKQNGVKDG SSTSVCENVD GFARGKMFPQ HCLN* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 5.0e-75 | 30 | 404 | 378 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-76 | 21 | 404 | 395 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 9.0e-79 | 23 | 400 | 385 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-91 | 58 | 389 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-113 | 31 | 402 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD17391.1 | 0 | 1 | 404 | 1 | 402 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_179147.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179148.1 | 0 | 1 | 400 | 1 | 400 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_179149.2 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_181560.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-20 | 109 | 373 | 100 | 360 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.000000000000004 | 119 | 345 | 69 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000000000004 | 119 | 345 | 69 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000000000004 | 119 | 345 | 69 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.000000000000004 | 119 | 345 | 69 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
