| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT2G22620.2 |
| Family | PL4 |
| Protein Properties | Length: 598 Molecular Weight: 68233.4 Isoelectric Point: 8.9014 |
| Chromosome | Chromosome/Scaffold: 2 Start: 9604772 End: 9610595 |
| Description | rhamnogalacturonate lyase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 113 | 579 | 0 |
| QKTDKFDFMAISDDRQRSMPSMADRENSKSLAYKEAVLLTNPSNPMFKGEVDDKYMYSMEDKDNNVHGWISSDPPVGFWMITPSDEFRLGGPIKQDLTSH AGPITLSMFTSTHYAGKEMRMDYRNGEPWKKVFGPVLAYLNSVSPKDSTLRLWRDAKRQMAAEVKSWPYDFITSEDYPLRHQRGTLEGQFLIKDSYVSRL KIYGKFAFVGLAPIGEAGSWQTESKGYQFWTKADRRGRFIIENVRAGNYSLYAWGSGFIGDYKYEQNITITPGSEMNVGPLVYEPPRNGPTLWEIGVPDR TAGEFYIPDPYPTLMNKLYVNPLQDRFRQYGLWDRYADLYPQNDLVYTIGVSDYRSDWFFAHVARNVGNDTYQPTTWQIIFNLKNVNRIGRYTLRIALAS AADSELQIRINDPKSDAIFTTGFIGKDNAIARHGIHGLYRLYSIDVAGNLLSVGDNTIFLTQTRSRT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 598 Download |
| MKVGAPASKP GRIIVQVFLL QLLLLLQSVH SQRSQNKLNI TKPGQNIPAL TVQLRRVGHD 60 TVVVDNGIVQ VTFSNPEGLI TGIKYHGIDN VLDDKIDDRG YWDVVWYEPE KKQKTDKFDF 120 MAISDDRQRS MPSMADRENS KSLAYKEAVL LTNPSNPMFK GEVDDKYMYS MEDKDNNVHG 180 WISSDPPVGF WMITPSDEFR LGGPIKQDLT SHAGPITLSM FTSTHYAGKE MRMDYRNGEP 240 WKKVFGPVLA YLNSVSPKDS TLRLWRDAKR QMAAEVKSWP YDFITSEDYP LRHQRGTLEG 300 QFLIKDSYVS RLKIYGKFAF VGLAPIGEAG SWQTESKGYQ FWTKADRRGR FIIENVRAGN 360 YSLYAWGSGF IGDYKYEQNI TITPGSEMNV GPLVYEPPRN GPTLWEIGVP DRTAGEFYIP 420 DPYPTLMNKL YVNPLQDRFR QYGLWDRYAD LYPQNDLVYT IGVSDYRSDW FFAHVARNVG 480 NDTYQPTTWQ IIFNLKNVNR IGRYTLRIAL ASAADSELQI RINDPKSDAI FTTGFIGKDN 540 AIARHGIHGL YRLYSIDVAG NLLSVGDNTI FLTQTRSRTP FQGIMYDYIR LESPFRT* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10320 | RGL4_N | 3.0e-7 | 61 | 109 | 49 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 9.0e-27 | 29 | 119 | 93 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| cd10316 | RGL4_M | 5.0e-30 | 294 | 393 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 9.0e-51 | 405 | 592 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 4.0e-52 | 32 | 261 | 243 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016829 | lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99719.1 | 0 | 1 | 119 | 1 | 119 | At2g22620 [Arabidopsis thaliana] |
| GenBank | AAS99719.1 | 0 | 112 | 597 | 192 | 677 | At2g22620 [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 1 | 119 | 1 | 119 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 112 | 597 | 192 | 677 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 112 | 594 | 189 | 671 | predicted protein [Populus trichocarpa] |
