| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT2G23900.1 |
| Family | GH28 |
| Protein Properties | Length: 478 Molecular Weight: 51644.6 Isoelectric Point: 8.6305 |
| Chromosome | Chromosome/Scaffold: 2 Start: 10174515 End: 10176626 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 88 | 434 | 0 |
| DGGVQLIVPPGKWLTGSFNLTSHFTLFIQKGATILASQDESEYPVVAPLPSYGQGRDAAGPTFASLISGTNLTDVVITGNNGTINGQGKYWWVKYRSGGF KGITRPYTIEIIFSQNVQISNITIIDSPAWNIHPVYCNNVIVKGVTILAPIDSPNTDGINPDSCTNTLIEDCYVVSGDDCIAVKSGWDQFGIKVGMPTQQ LSIRRLTCISPDSAGIALGSEMSGGIKDVRIEDITLLQTQSAIRIKTAVGRGGYVKDIFARRFTMKTMKYVFWMSGAYNQHPASGFDPKAMPVITNINYR DMTADNVTQPARLDGFKNDPFTKICMSNIKIDLAAEPKKLLWNCTSI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 478 Download |
| MEFSINPSTL KMIRTSFCIL VVLAISSFSM MEARDLASKG KTNIEYMALN CRKHTAVLTE 60 FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW LTGSFNLTSH FTLFIQKGAT 120 ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV 180 KYRSGGFKGI TRPYTIEIIF SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS 240 PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS 300 AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW 360 MSGAYNQHPA SGFDPKAMPV ITNINYRDMT ADNVTQPARL DGFKNDPFTK ICMSNIKIDL 420 AAEPKKLLWN CTSISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-18 | 60 | 345 | 309 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-23 | 58 | 443 | 402 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 5.0e-24 | 55 | 418 | 375 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-25 | 174 | 418 | 250 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 8.0e-52 | 56 | 353 | 322 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC63679.1 | 0 | 12 | 477 | 1 | 466 | putative polygalacturonase [Arabidopsis thaliana] |
| GenBank | ABK28510.1 | 0 | 1 | 477 | 1 | 477 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_179968.2 | 0 | 1 | 477 | 1 | 477 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_190464.1 | 0 | 12 | 475 | 1 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002513653.1 | 0 | 19 | 477 | 16 | 471 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 58 | 421 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 58 | 421 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 58 | 421 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 58 | 421 | 30 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-16 | 100 | 418 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
