Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT2G26620.1 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 43981.4 Isoelectric Point: 8.6818 |
Chromosome | Chromosome/Scaffold: 2 Start: 11325163 End: 11326835 |
Description | polygalacturonase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 388 | 0 |
ACKRISGSSKIYVPKGTFYLGGVEFVGPCKNPIEFIIDGTLLAPANPNDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNPNCPKLAISMGF AFVNNSNIKDITSLNSKMGHFNFFFVHHFNITGVTITAPSDSPNTDGIKMGSCSNIQISNTNIGTGDDCIAILSGTTKLNISNINCGPGHGISVGSLGKN KDEKDVKDLFVRDVIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDVGKPINIDQKYCPHPPCEHERKSHVQIQDLKLKNIYGTSKNKVAVNLQCSK SFPCKNVELIDINIKQNGLEDGSSITVCENVD |
Full Sequence |
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Protein Sequence Length: 403 Download |
MACIAFVLKA LCLSLLLIVV ASRSTIRPKV FNVQRHGSKP DGKTDNTNAF TSIWSRACKR 60 ISGSSKIYVP KGTFYLGGVE FVGPCKNPIE FIIDGTLLAP ANPNDIKQDT WINFRYINNL 120 SISGSGTLDG QGKQSWPLND CHKNPNCPKL AISMGFAFVN NSNIKDITSL NSKMGHFNFF 180 FVHHFNITGV TITAPSDSPN TDGIKMGSCS NIQISNTNIG TGDDCIAILS GTTKLNISNI 240 NCGPGHGISV GSLGKNKDEK DVKDLFVRDV IFNGTSDGIR IKTWESSASK ILVSNFVYEN 300 IQMIDVGKPI NIDQKYCPHP PCEHERKSHV QIQDLKLKNI YGTSKNKVAV NLQCSKSFPC 360 KNVELIDINI KQNGLEDGSS ITVCENVDGF ARGKMFPQHC LN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 9.0e-74 | 15 | 402 | 391 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-77 | 14 | 402 | 399 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-78 | 23 | 398 | 383 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-90 | 58 | 387 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-115 | 31 | 400 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0012505 | endomembrane system |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD17391.1 | 0 | 1 | 402 | 1 | 402 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 1 | 402 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179148.1 | 0 | 1 | 398 | 1 | 400 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179149.2 | 0 | 1 | 402 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_180230.1 | 0 | 1 | 402 | 1 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-20 | 109 | 365 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.0000000000008 | 119 | 387 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000008 | 119 | 387 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000008 | 119 | 387 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.0000000000008 | 119 | 387 | 69 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |