| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT2G33160.1 |
| Family | GH28 |
| Protein Properties | Length: 665 Molecular Weight: 74972.2 Isoelectric Point: 8.5456 |
| Chromosome | Chromosome/Scaffold: 2 Start: 14053404 End: 14056246 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 57 | 392 | 0 |
| EACQWSYGRSTVYIPSGIFYLRQVTFSGPCKSSITFFIRGTLLAPRNPYAINQEEWILFKYVDNLTVTGGGLLDGQGSYSWPLNDCNKNTNCRTLAMNIG FAFVKSSKINGLRSINSKMGHFNLFSVEDFNITGVTITAPGDSPNTDGIKIGKSSHMQIYNVTIGTGDDCIAILDGTSNLDISDVRCGPGHGISVGSLGR YKEEKNVQGLTVRNSIINGTTDGLRIKTWAKSVSQISVSNFLYENIQMINVGNPIVIDQQYCPHGQCDSPGKYASHVQIKDVKYNNIWGTSTSKEALKMQ CSKTFPCQDVELSNINLHYVGRDGLVTALCENVGGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 665 Download |
| MASRVLLILC VPSLFFFLAA STKEYPGQPK IFDVRNYGAR ADSQRDNAFA FTKAWNEACQ 60 WSYGRSTVYI PSGIFYLRQV TFSGPCKSSI TFFIRGTLLA PRNPYAINQE EWILFKYVDN 120 LTVTGGGLLD GQGSYSWPLN DCNKNTNCRT LAMNIGFAFV KSSKINGLRS INSKMGHFNL 180 FSVEDFNITG VTITAPGDSP NTDGIKIGKS SHMQIYNVTI GTGDDCIAIL DGTSNLDISD 240 VRCGPGHGIS VGSLGRYKEE KNVQGLTVRN SIINGTTDGL RIKTWAKSVS QISVSNFLYE 300 NIQMINVGNP IVIDQQYCPH GQCDSPGKYA SHVQIKDVKY NNIWGTSTSK EALKMQCSKT 360 FPCQDVELSN INLHYVGRDG LVTALCENVG GSIRGKIVPA NCRINLFLPS NIITDSNSTL 420 EDKMQGIFQL ANTTQTQRFH QLPLWILWRL WNSRNILYFQ RRHVPWETTL QLAQMDLQEW 480 NEAVTPSHIN SHGTTIRSHI PNWRRPTNGW VKCNVDGSFI NGNIPGKGGW IVRDHNGRYE 540 FAGQAIGNCI DNALECEFQA LLMAMQHCWS KGYRRICFEG DNKEMFDLIN GLKMHFGAFN 600 WIRDILWWAS KFEQTQFQWT NRQNNKPADI LARTPLQHQF LFANHFWVPR VISFALHCDY 660 TSSI* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-82 | 29 | 399 | 378 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-84 | 20 | 429 | 419 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 4.0e-86 | 31 | 402 | 374 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-102 | 66 | 389 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-125 | 1 | 402 | 409 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003676 | nucleic acid binding |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71796.1 | 0 | 30 | 402 | 33 | 410 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
| RefSeq | NP_175003.1 | 0 | 9 | 402 | 11 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_175004.1 | 0 | 9 | 396 | 11 | 396 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_177961.2 | 0 | 30 | 402 | 33 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_180874.1 | 0 | 1 | 664 | 1 | 664 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 0.000000000000002 | 120 | 350 | 70 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 0.000000000000003 | 96 | 389 | 42 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000003 | 96 | 389 | 42 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000003 | 96 | 389 | 42 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000003 | 96 | 389 | 42 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
