| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT2G39640.1 |
| Family | CBM43 |
| Protein Properties | Length: 550 Molecular Weight: 59817.9 Isoelectric Point: 6.1395 |
| Chromosome | Chromosome/Scaffold: 2 Start: 16525086 End: 16527012 |
| Description | glucan endo-1,3-beta-glucosidase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 359 | 440 | 1.8e-28 |
| WCVGKPEATLMQLQANIDWVCSHGIDCTPISPGGICFDNNNMTTRSSFIMNAYYQSKGCVDVVCDFSGTGIVTSTNPSTSTC | |||
| CBM43 | 460 | 541 | 6.6e-30 |
| WCMAKQEATETQLQANIDWVCSQGIDCKPISPGGICFDNNNMKTRSTFIMNAYYESKGYSKDACDFRGSGIVTTTNPSTSTC | |||
| GH17 | 30 | 338 | 0 |
| IGINYGTLGNLQPPQQVVDFIKTKTTFDSVKIYDANPDILRAFAGSEINITIMVPNGNIPAMVNVANARQWVAANVLPFQQQIKFKYVCVGNEILASNDN NLISNLVPAMQSLNEALKASNLTYIKVTTPHAFTISYNRNTPSESRFTNDQKDIFTKILEFHRQAKSPFMINAYTFFTMDTNNVNYAIFGPSNAITDTNT QQTYTNMFDAVMDATYSAMKALGYGDVDIAVGETGWPTACDASWCSPQNAENYNLNIIKRAQVIGTPLMPNRHIDIFIFALFNEDGKPGPTRERNWGIFK PDFSPMYDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 550 Download |
| MAKTIRSFIL PFLLIVAGVI FQLSAVTSAI GINYGTLGNL QPPQQVVDFI KTKTTFDSVK 60 IYDANPDILR AFAGSEINIT IMVPNGNIPA MVNVANARQW VAANVLPFQQ QIKFKYVCVG 120 NEILASNDNN LISNLVPAMQ SLNEALKASN LTYIKVTTPH AFTISYNRNT PSESRFTNDQ 180 KDIFTKILEF HRQAKSPFMI NAYTFFTMDT NNVNYAIFGP SNAITDTNTQ QTYTNMFDAV 240 MDATYSAMKA LGYGDVDIAV GETGWPTACD ASWCSPQNAE NYNLNIIKRA QVIGTPLMPN 300 RHIDIFIFAL FNEDGKPGPT RERNWGIFKP DFSPMYDVGV LKGGGSPLPF PPINNNGKWC 360 VGKPEATLMQ LQANIDWVCS HGIDCTPISP GGICFDNNNM TTRSSFIMNA YYQSKGCVDV 420 VCDFSGTGIV TSTNPSTSTC PIPIGEGGGG NGAKSKSANW CMAKQEATET QLQANIDWVC 480 SQGIDCKPIS PGGICFDNNN MKTRSTFIMN AYYESKGYSK DACDFRGSGI VTTTNPSTST 540 CVVPASVTL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 2.0e-19 | 460 | 530 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| pfam07983 | X8 | 7.0e-20 | 358 | 429 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 6.0e-35 | 460 | 542 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| smart00768 | X8 | 1.0e-35 | 358 | 440 | 83 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-82 | 30 | 338 | 316 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| GO:0043169 | cation binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76666.1 | 0 | 33 | 440 | 32 | 447 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| GenBank | AAK76666.1 | 5e-24 | 445 | 541 | 347 | 447 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
| RefSeq | NP_181494.1 | 0 | 1 | 549 | 1 | 549 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_191103.1 | 0 | 33 | 440 | 32 | 447 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| RefSeq | NP_191103.1 | 5e-24 | 445 | 541 | 347 | 447 | glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 0 | 30 | 338 | 2 | 313 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 3f55_C | 0 | 30 | 338 | 2 | 313 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 3f55_B | 0 | 30 | 338 | 2 | 313 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 3f55_A | 0 | 30 | 338 | 2 | 313 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| PDB | 3em5_D | 0 | 30 | 338 | 2 | 313 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
