| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT2G41850.1 |
| Family | GH28 |
| Protein Properties | Length: 434 Molecular Weight: 46622.7 Isoelectric Point: 8.8659 |
| Chromosome | Chromosome/Scaffold: 2 Start: 17461655 End: 17464161 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 91 | 416 | 0 |
| WKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCNSILTVQIFGTLSASQKRSDYKDISKWIMFDGVNNLSVDGGDTGVVDGNGETWWQNSCKRNKAKPCTK APTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESGSQNVQINDITCGPGHGIS IGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVKNPIIIDQDYCDKSKCTTEKSAVQVKNVVYRDISGTSASENAITF NCSKNYPCQGIVLDRVNIKGGKATCT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 434 Download |
| MARCTNLVTV FLLWALLMFS WCKASRISPN VYDHSYKRFK SDSLIKRRED ITGLRSFVRA 60 SLRTPTTVSV SDFGAKGDGK TDDTQAFVNA WKKACSSNGA VNLLVPKGNT YLLKSIQLTG 120 PCNSILTVQI FGTLSASQKR SDYKDISKWI MFDGVNNLSV DGGDTGVVDG NGETWWQNSC 180 KRNKAKPCTK APTALTFYNS KSLIVKNLKV RNAQQIQISI EKCSNVQVSN VVVTAPADSP 240 NTDGIHITNT QNIRVSESII GTGDDCISIE SGSQNVQIND ITCGPGHGIS IGSLGDDNSK 300 AFVSGVTVDG AKLSGTDNGV RIKTYQGGSG TASNIIFQNI QMDNVKNPII IDQDYCDKSK 360 CTTEKSAVQV KNVVYRDISG TSASENAITF NCSKNYPCQG IVLDRVNIKG GKATCTNANV 420 VDKGAVLPQC NST* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 5.0e-80 | 57 | 409 | 358 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 1.0e-99 | 66 | 428 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-113 | 95 | 420 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-127 | 59 | 408 | 353 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 0 | 1 | 431 | 431 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009830 | cell wall modification involved in abscission |
| GO:0009901 | anther dehiscence |
| GO:0010047 | fruit dehiscence |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC02763.1 | 0 | 1 | 433 | 1 | 426 | putative polygalacturonase [Arabidopsis thaliana] |
| GenBank | AAL84942.1 | 0 | 1 | 433 | 1 | 433 | At2g41850/T11A7.5 [Arabidopsis thaliana] |
| EMBL | CAC05657.1 | 0 | 1 | 433 | 1 | 434 | endopolygalacturonase [Brassica napus] |
| RefSeq | NP_191310.1 | 0 | 1 | 430 | 1 | 430 | ADPG1; polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_850359.1 | 0 | 1 | 433 | 1 | 433 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 3e-24 | 92 | 420 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 3e-24 | 92 | 420 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 3e-24 | 92 | 420 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 3e-24 | 92 | 420 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 3e-24 | 92 | 420 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
