| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT2G43860.1 |
| Family | GH28 |
| Protein Properties | Length: 406 Molecular Weight: 43462.3 Isoelectric Point: 6.8585 |
| Chromosome | Chromosome/Scaffold: 2 Start: 18162945 End: 18164428 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 57 | 387 | 0 |
| DVACASANPTTIIVPKGRFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIASSKHWIWFEDVTDVSIYGGILDAQGTSLWKCKNNGGHNCPTGAKSL VFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLG RAEEEQGVDNVTVSNVDFMGTNNGVRIKTWGKDSNSFARNIVFQHINMKMVKNPIIIDQHYCLHKPCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSK EKPCTGIVMDDVNLVSVHRPAQASCDNANGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 406 Download |
| MVYNTSCLIL PLALIILDFT LISSLAHPIP STLNVLSYGA KPDGSKDSTK AFLAAWDVAC 60 ASANPTTIIV PKGRFLVGNL VFHGNECKQA PISIRIAGSI VAPEDFRIIA SSKHWIWFED 120 VTDVSIYGGI LDAQGTSLWK CKNNGGHNCP TGAKSLVFSG SNNIKISGLT SINSQKFHIV 180 IDNSNNVNID GVKVSADENS PNTDGIHVES SHSVHITNSR IGTGDDCISI GPGSTNVFIQ 240 TIRCGPGHGI SIGSLGRAEE EQGVDNVTVS NVDFMGTNNG VRIKTWGKDS NSFARNIVFQ 300 HINMKMVKNP IIIDQHYCLH KPCPKQESGV KVSNVRYEDI HGTSNTEVAV LLDCSKEKPC 360 TGIVMDDVNL VSVHRPAQAS CDNANGSAND VVPFTPCLKR EIIIT* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-87 | 60 | 384 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-88 | 33 | 398 | 373 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-89 | 30 | 385 | 362 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 5.0e-102 | 32 | 384 | 361 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-116 | 6 | 400 | 397 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC64184.1 | 0 | 9 | 398 | 7 | 393 | endopolygalacturonase [Prunus persica] |
| GenBank | ABC72324.1 | 0 | 9 | 398 | 7 | 393 | endo-polygalacturonase [Prunus persica] |
| GenBank | ABD33834.1 | 0 | 9 | 398 | 7 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
| RefSeq | NP_181914.1 | 0 | 1 | 405 | 1 | 405 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002529090.1 | 0 | 12 | 398 | 12 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-18 | 122 | 372 | 109 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 1e-16 | 119 | 381 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-16 | 119 | 381 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 1e-16 | 119 | 381 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 1e-16 | 119 | 381 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
