| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT2G43870.1 |
| Family | GH28 |
| Protein Properties | Length: 385 Molecular Weight: 40810.5 Isoelectric Point: 8.281 |
| Chromosome | Chromosome/Scaffold: 2 Start: 18166615 End: 18168264 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 45 | 371 | 0 |
| QTACASSRPVTIVVPKGRFLLRSVTFDGSKCKPKPVTFRIDGTLVAPADYRVIGNEDYWIFFQHLDGITVYGGVLDARGASLWDCKKSGKNCPSGATTIG FQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDGIHVQSSSSVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGK DSVESGVQNVTVKTVTFTGTDNGVRIKSWARPSSGFAKNIRFQHCVMNNVENPIIIDQNYCPDHDCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSK KPCTGIRLEDVKLTYQNKPAASACTHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 385 Download |
| MASLLVLFVF FFISSCSAQS YNVLSFGAKP DGKTDATKAF MAVWQTACAS SRPVTIVVPK 60 GRFLLRSVTF DGSKCKPKPV TFRIDGTLVA PADYRVIGNE DYWIFFQHLD GITVYGGVLD 120 ARGASLWDCK KSGKNCPSGA TTIGFQSSSN VVVSGLTSLN SQMFHVVING CNNVKLQGVK 180 VLAAGNSPNT DGIHVQSSSS VSIFNTKIST GDDCVSIGPG TNGLWIENVA CGPGHGISIG 240 SLGKDSVESG VQNVTVKTVT FTGTDNGVRI KSWARPSSGF AKNIRFQHCV MNNVENPIII 300 DQNYCPDHDC PRQVSGIKIS DVLFVDIHGT SATEVGVKLD CSSKKPCTGI RLEDVKLTYQ 360 NKPAASACTH AGGIEAGFFQ PNCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-89 | 22 | 383 | 369 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-91 | 48 | 364 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-93 | 23 | 381 | 368 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 1.0e-108 | 17 | 383 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 5.0e-142 | 13 | 384 | 375 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28534.1 | 0 | 1 | 384 | 1 | 384 | unknown [Arabidopsis thaliana] |
| EMBL | CAB75804.1 | 0 | 18 | 384 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 1 | 384 | 1 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_191544.2 | 0 | 18 | 384 | 20 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002529090.1 | 0 | 3 | 384 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-20 | 116 | 358 | 123 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 2e-17 | 58 | 335 | 28 | 309 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1czf_B | 2e-17 | 107 | 365 | 95 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 2e-17 | 107 | 365 | 95 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1ib4_B | 0.00000000000003 | 116 | 368 | 81 | 339 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
