| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT2G43880.1 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 42735.6 Isoelectric Point: 10.2022 |
| Chromosome | Chromosome/Scaffold: 2 Start: 18173034 End: 18174482 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 55 | 383 | 0 |
| SLACGSRARAMVYVPRGTYLVKNLVFWGPCKNIITFKNDGTLVAPANYWDIGNSGYWILFAKVNRISVYGGTIDARGAGYWSCRKKGSHCPQGARSISFS WCNNVLLSGLSSFNSQNMHVTVHHSSNVRIENVRIRAPSGSPNTDGIHVQSSSGVTISGGTIATGDDCIALSQGSRNIWIERVNCGPGHGISIGSLGDYA NEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMNNVENPVIIDQNYCPNGKGCPRQSSGVKISGVTFANIKGTSTTPIAMKLDCSGSN HCTGLRLQDIKLTYMRRSSASYCRNAHGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MANNISFPCA IIFFSINIFF LIKSSHAMPS FNVQRYGARG DGRADATKSF LTAWSLACGS 60 RARAMVYVPR GTYLVKNLVF WGPCKNIITF KNDGTLVAPA NYWDIGNSGY WILFAKVNRI 120 SVYGGTIDAR GAGYWSCRKK GSHCPQGARS ISFSWCNNVL LSGLSSFNSQ NMHVTVHHSS 180 NVRIENVRIR APSGSPNTDG IHVQSSSGVT ISGGTIATGD DCIALSQGSR NIWIERVNCG 240 PGHGISIGSL GDYANEEGVQ NVTVTSSVFT KTQNGVRIKT WARPSRGFVN NVVFRNLIMN 300 NVENPVIIDQ NYCPNGKGCP RQSSGVKISG VTFANIKGTS TTPIAMKLDC SGSNHCTGLR 360 LQDIKLTYMR RSSASYCRNA HGRASGVMVP RNCM* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 7.0e-82 | 30 | 391 | 369 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-86 | 58 | 385 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-90 | 31 | 394 | 372 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 8.0e-101 | 26 | 393 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-146 | 31 | 394 | 365 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_181916.1 | 0 | 1 | 394 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181917.1 | 0 | 1 | 394 | 1 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002331633.1 | 0 | 5 | 394 | 6 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 18 | 394 | 10 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529095.1 | 0 | 11 | 394 | 5 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-22 | 122 | 367 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1czf_B | 5e-21 | 124 | 379 | 104 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 5e-21 | 124 | 379 | 104 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 1e-20 | 124 | 385 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 1e-20 | 124 | 385 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
