y
Basic Information | |
---|---|
Species | Arabidopsis thaliana |
Cazyme ID | AT2G43890.1 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 42008.1 Isoelectric Point: 10.2377 |
Chromosome | Chromosome/Scaffold: 2 Start: 18176924 End: 18178390 |
Description | polygalacturonase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 52 | 380 | 0 |
WQAACRSAAAVTVTVPRGSFLLKPVEFRGPCRSRITFQIYGTIVAPSDYRGLGNSGYWILFVKVNRISIIGGTLDARGASFWACRKSGKSCPVGARSMTF NWANDVVVSGLTSINSQTTHLVINSCNNVIVRKVKLVAPDQSPNTDGLHVQGSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRD ANEAGVENITLINSVFSGSDNGVRIKTWARQSTGFVRNVLFQNLIMKNVQNPIIVDQNYCPSNQGCPKQGSGVKISQVVYRNIQGTSRTQQALTFDCSRS NPCQAIRLHDIKLTFNGRSATSTCKNIKG |
Full Sequence |
---|
Protein Sequence Length: 393 Download |
MDNNKLVAVL LMFFSSFLLM KSSTAASNYN VVSFGAKPDG RTDSTKAFLG AWQAACRSAA 60 AVTVTVPRGS FLLKPVEFRG PCRSRITFQI YGTIVAPSDY RGLGNSGYWI LFVKVNRISI 120 IGGTLDARGA SFWACRKSGK SCPVGARSMT FNWANDVVVS GLTSINSQTT HLVINSCNNV 180 IVRKVKLVAP DQSPNTDGLH VQGSAGVTVT DGTFHTGDDC ISIGPGTRNL YMSKLNCGPG 240 HGISIGSLGR DANEAGVENI TLINSVFSGS DNGVRIKTWA RQSTGFVRNV LFQNLIMKNV 300 QNPIIVDQNY CPSNQGCPKQ GSGVKISQVV YRNIQGTSRT QQALTFDCSR SNPCQAIRLH 360 DIKLTFNGRS ATSTCKNIKG VKAGVVMPQG CL* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-93 | 56 | 379 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-99 | 25 | 389 | 372 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-100 | 31 | 392 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-106 | 29 | 391 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-177 | 24 | 392 | 370 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0012505 | endomembrane system |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181917.1 | 0 | 1 | 392 | 1 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002309713.1 | 0 | 9 | 392 | 9 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 9 | 392 | 9 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529097.1 | 0 | 11 | 392 | 7 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 9 | 392 | 5 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 2e-19 | 122 | 383 | 104 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-19 | 122 | 383 | 104 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 4e-19 | 122 | 378 | 81 | 333 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 4e-19 | 122 | 378 | 81 | 333 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ia5_A | 4e-19 | 122 | 378 | 81 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |