| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G01270.1 |
| Family | PL1 |
| Protein Properties | Length: 476 Molecular Weight: 53855.1 Isoelectric Point: 9.3581 |
| Chromosome | Chromosome/Scaffold: 3 Start: 82685 End: 84897 |
| Description | pectate lyase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 186 | 392 | 0 |
| VIQKEPLWIVFKHDMSIRLSQELMITSDKTIDARGANVHIAYGAGITMQYVHNIIIHGLHVHHIVKSSGGLIRDSINHFGHRGEADGDGISIFGATNIWL DHISMSKCQDGLIDAIMGSTAITISNSHFTHHNDVMLLGAQNNNMDDKKMQVTVAYNHFGKGLVQRMPRVRWGFVHVVNNDYTHWELYAIGGSQGPTILS HGNRFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| METARLFKLV CVICIASLIP TIRANVADET DEYWVNKANE ARKHTLMAYH PDPYEIVDHF 60 HERHYDNSTD VEGTEEEKAV ASEEEDVIEM ISSPTNSTRR SLTGRGKGKG KGKWSKLTGP 120 CTASNPIDKC WRCQPDWARR RKKLVHCVRG FGYRTTGGKR GRIYVVTSPR DDDMVNPRPG 180 TLRHAVIQKE PLWIVFKHDM SIRLSQELMI TSDKTIDARG ANVHIAYGAG ITMQYVHNII 240 IHGLHVHHIV KSSGGLIRDS INHFGHRGEA DGDGISIFGA TNIWLDHISM SKCQDGLIDA 300 IMGSTAITIS NSHFTHHNDV MLLGAQNNNM DDKKMQVTVA YNHFGKGLVQ RMPRVRWGFV 360 HVVNNDYTHW ELYAIGGSQG PTILSHGNRF IAPPHKQHYR EVTKRDYASE SEWKNWNWRS 420 EKDVFMNNAY FRQSGNPHFK CSHSRQQMIK PKNGMAVSKL TKYAGALDCR VGKAC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 1.0e-15 | 25 | 70 | 46 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 3.0e-26 | 155 | 390 | 256 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-56 | 206 | 390 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-65 | 199 | 394 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008150 | biological_process |
| GO:0012505 | endomembrane system |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM60924.1 | 0 | 1 | 475 | 1 | 475 | putative pectate lyase [Arabidopsis thaliana] |
| GenBank | ABK28696.1 | 0 | 1 | 475 | 1 | 472 | unknown [Arabidopsis thaliana] |
| DDBJ | BAH20311.1 | 0 | 111 | 475 | 1 | 365 | AT3G01270 [Arabidopsis thaliana] |
| RefSeq | NP_186776.1 | 0 | 1 | 475 | 1 | 475 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197015.4 | 0 | 1 | 475 | 1 | 472 | lyase/ pectate lyase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 125 | 467 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 125 | 467 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-17 | 194 | 392 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 0.00000000000007 | 206 | 390 | 74 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 0.0000000000006 | 208 | 390 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
