| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G06770.2 |
| Family | GH28 |
| Protein Properties | Length: 447 Molecular Weight: 48124.3 Isoelectric Point: 6.7197 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2134800 End: 2137228 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 420 | 0 |
| DKGGAQLYVPPGHWLTGSFSLTSHLTLFLENGAVIVASQDPSHWEVVDPLPSYGRGIDLPGKRYKSLINGNKLHDVVVTGDNGTIDGQGLVWWDRFTSHS LKYNRPHLIEFLSSENVIVSNLTFLNAPAYSIYSIYSSHVYIHKILAHSSPKSPYTIGIVPDSSDYVCIQNSTINVGYDAISLKSGWDEYGIAYSRPTEN VHIRNVYLRGASGSSISFGSEMSGGISDVVVDNAHIHYSLTGIAFRTTKGRGGYIKEIDISNIDMLRIGTAIVANGSFGSHPDDKYDVNALPLVSHIRLS NISGENIGIAGKLFGIKESPFSSVTLSNVSLSMSSGSSVSWQCSYVY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 447 Download |
| MSVVTILILA LTSVIPIYAN VHGAGKICDE LGRRSLSTRP HSVSITDFGA VGDGKTLNTL 60 AFQNAVFYLM SFADKGGAQL YVPPGHWLTG SFSLTSHLTL FLENGAVIVA SQDPSHWEVV 120 DPLPSYGRGI DLPGKRYKSL INGNKLHDVV VTGDNGTIDG QGLVWWDRFT SHSLKYNRPH 180 LIEFLSSENV IVSNLTFLNA PAYSIYSIYS SHVYIHKILA HSSPKSPYTI GIVPDSSDYV 240 CIQNSTINVG YDAISLKSGW DEYGIAYSRP TENVHIRNVY LRGASGSSIS FGSEMSGGIS 300 DVVVDNAHIH YSLTGIAFRT TKGRGGYIKE IDISNIDMLR IGTAIVANGS FGSHPDDKYD 360 VNALPLVSHI RLSNISGENI GIAGKLFGIK ESPFSSVTLS NVSLSMSSGS SVSWQCSYVY 420 GSSESVIPEP CPELKRDADA YGRAAV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-11 | 38 | 377 | 344 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 1.0e-12 | 33 | 346 | 329 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-14 | 33 | 346 | 332 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-15 | 141 | 346 | 209 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-24 | 43 | 355 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0010583 | response to cyclopentenone |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65366.1 | 0 | 70 | 446 | 1 | 377 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001032043.1 | 0 | 1 | 444 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566292.1 | 0 | 70 | 446 | 1 | 377 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680409.1 | 0 | 15 | 444 | 17 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_850525.1 | 0 | 1 | 446 | 1 | 446 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2e-27 | 41 | 427 | 26 | 430 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2e-27 | 41 | 427 | 26 | 430 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2e-27 | 41 | 427 | 26 | 430 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2e-27 | 41 | 427 | 26 | 430 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 1e-16 | 87 | 419 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
