| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G07820.1 |
| Family | GH28 |
| Protein Properties | Length: 392 Molecular Weight: 41681.5 Isoelectric Point: 7.3366 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2496440 End: 2498095 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 44 | 376 | 0 |
| TSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPIEVTLQGTVKADGNAIQGKEKWVVFGNIDGFKLNGGGAFDGEGNAAWRVNNCHKTFECKKLPISIRF DFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRY GHEQDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSK GYPCQNVEIGDIDIKYNGADGPATFHCSNVSPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 392 Download |
| MGGYFGVSTI FIICLLGISA NAEVFTIGSS SGSDITQALL KAFTSACQSS SPSKVVIPKG 60 EFKLGEIEMR GPCKAPIEVT LQGTVKADGN AIQGKEKWVV FGNIDGFKLN GGGAFDGEGN 120 AAWRVNNCHK TFECKKLPIS IRFDFILNSE IRDISSIDAK NFHINVLGAK NMTMNNIKIV 180 APEDSPNTDG IHLGRSDGVK ILNSFISTGD DCISVGDGMK NLHVEKVTCG PGHGISVGSL 240 GRYGHEQDVS GIKVINCTLQ ETDNGLRIKT WPSAACSTTA SDIHFEDIIL KDVSNPILID 300 QEYCPWNQCN KQKASTIKLV NISFKNIRGT SGNKDAVKLL CSKGYPCQNV EIGDIDIKYN 360 GADGPATFHC SNVSPKILGS QSPKACSAPA A* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 8.0e-76 | 33 | 384 | 359 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-76 | 33 | 386 | 360 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 3.0e-79 | 33 | 386 | 357 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 4.0e-121 | 33 | 386 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-124 | 47 | 373 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABG38468.1 | 0 | 1 | 389 | 1 | 389 | pollen-expressed protein MF9c [Brassica oleracea] |
| GenBank | ABL63521.1 | 0 | 1 | 389 | 1 | 389 | pollen-specific protein MF9l [Brassica oleracea var. alboglabra] |
| GenBank | ABN13878.1 | 0 | 1 | 389 | 1 | 389 | polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CAA05892.1 | 0 | 1 | 391 | 1 | 391 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187439.1 | 0 | 1 | 391 | 1 | 391 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0000000000001 | 102 | 303 | 117 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 0.0000000000006 | 33 | 357 | 34 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 0.000000000006 | 74 | 373 | 27 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000006 | 74 | 373 | 27 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000006 | 74 | 373 | 27 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
