| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G07830.1 |
| Family | GH28 |
| Protein Properties | Length: 398 Molecular Weight: 42913.2 Isoelectric Point: 8.6918 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2499243 End: 2501021 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 45 | 377 | 0 |
| TTACQSPTPRKVVIPKGQFKLGEIMMSGPCKSPVEITLLGTVLADGNSIHGKEKWVVFQRMDGFRLNGGGTFDGEGNAAWRVNNCHKTFECKKLPISIRF DFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGVSIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRY GHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNPILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCSK GYPCENVQVGDINIQYTGADGPATFMCSNVRPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 398 Download |
| MGSYFGISTI FVICLLGFSA NAHEVLRLTS SPGSDITQAL LRAFTTACQS PTPRKVVIPK 60 GQFKLGEIMM SGPCKSPVEI TLLGTVLADG NSIHGKEKWV VFQRMDGFRL NGGGTFDGEG 120 NAAWRVNNCH KTFECKKLPI SIRFDFVTNA EIRDISSIDA KNFHINVIGA KNMTFDNVKI 180 MAPAESPNTD GIHLGRSVGV SIINSRISTG DDCVSVGDGM VNLLVKNVVC GPGHGISVGS 240 LGRYGHEQDV SGIRVINCTL QETDNGLRIK TWPSAACSTT ASNIHFENII LRNVSNPILI 300 DQEYCPWNQC NKQKSSSIKL ANISFRRIRG TSGNKDAVKL LCSKGYPCEN VQVGDINIQY 360 TGADGPATFM CSNVRPKLVG TQFPKACNTP PVLTQPK* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-75 | 34 | 388 | 362 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-78 | 19 | 387 | 374 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 7.0e-83 | 34 | 387 | 360 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-118 | 34 | 387 | 354 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-126 | 48 | 374 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009505 | plant-type cell wall |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABN13878.1 | 0 | 1 | 390 | 1 | 389 | polygalacturonase [Brassica rapa subsp. campestris] |
| EMBL | CAA05892.1 | 0 | 1 | 390 | 1 | 389 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187439.1 | 0 | 1 | 390 | 1 | 389 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
| RefSeq | NP_187440.1 | 0 | 1 | 397 | 1 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_187441.1 | 0 | 1 | 391 | 1 | 391 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000000001 | 112 | 328 | 115 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.00000000000003 | 177 | 331 | 154 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1rmg_A | 0.0000000000001 | 34 | 371 | 34 | 350 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.0000000000008 | 60 | 374 | 13 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000000008 | 60 | 374 | 13 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
