| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G07840.1 |
| Family | GH28 |
| Protein Properties | Length: 402 Molecular Weight: 42591.8 Isoelectric Point: 8.083 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2501893 End: 2503565 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 45 | 377 | 0 |
| TSACQAPTASKVVITKGEFKLGEIEMTGPCKAPVEINLQGTLKADGKAIQGKERWVVFLRINGFKLNGGGIFDGEGNAAWRVNNCHKTFECKKLPISIRF DFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGVKILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRY VHEQDVTGITVVNCTLQGTDNGLRIKTWPSAACATTASGIHFENIILNNVSNPILIDQEYCPWNQCNKQKPSTIKLVDISFKNIRGTSGNKDAVKLLCSK AHPCANVEIGNINLEYKGADGPPTFMCSNVSPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 402 Download |
| MGSYLGISAV LFVISLLGFS ANAEVFNVGG SPGSDITQAL LKAFTSACQA PTASKVVITK 60 GEFKLGEIEM TGPCKAPVEI NLQGTLKADG KAIQGKERWV VFLRINGFKL NGGGIFDGEG 120 NAAWRVNNCH KTFECKKLPI SIRFDFVENA EIRDISSIDA KNFHINVLGA KNMTFDNVKV 180 IAPAESPNTD GIHLGRSEGV KILNSKIATG DDCISVGDGM KNLHVENVMC GPGHGISVGS 240 LGRYVHEQDV TGITVVNCTL QGTDNGLRIK TWPSAACATT ASGIHFENII LNNVSNPILI 300 DQEYCPWNQC NKQKPSTIKL VDISFKNIRG TSGNKDAVKL LCSKAHPCAN VEIGNINLEY 360 KGADGPPTFM CSNVSPKLVG TQNPKACSAG PTPKTAAKGD L* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-75 | 26 | 385 | 367 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-78 | 26 | 387 | 368 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 4.0e-79 | 8 | 387 | 397 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 9.0e-121 | 19 | 387 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-128 | 48 | 374 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM74219.1 | 0 | 1 | 398 | 1 | 396 | AF518563_1 putative pollen polygalacturonase [Brassica oleracea] |
| GenBank | AAP42648.1 | 0 | 1 | 398 | 1 | 396 | polygalacturonase [Brassica napus] |
| EMBL | CAA05892.1 | 0 | 1 | 389 | 1 | 388 | polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187439.1 | 0 | 1 | 389 | 1 | 388 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
| RefSeq | NP_187441.1 | 0 | 1 | 401 | 1 | 401 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-19 | 112 | 358 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.0000000000002 | 85 | 374 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.0000000000002 | 85 | 374 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.0000000000002 | 85 | 374 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.0000000000002 | 85 | 374 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
