| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G07850.1 |
| Family | GH28 |
| Protein Properties | Length: 445 Molecular Weight: 45600.3 Isoelectric Point: 8.4286 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2505547 End: 2507528 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 96 | 424 | 0 |
| ACAAGSTITVPKGEYMVESLEFKGPCKGPVTLELNGNFKAPATVKTTKPHAGWIDFENIADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLPINIRFT GLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYP NEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGV PCTNIALSDINLVHNGKEGPAVSACSNIK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| MVGSHKASGV LLVLLVVMAT TIANGTPVVD KAKNAATAVE DTAKNAATAV GGAAASVGAK 60 VSGAKPGAAV DVKASGAKGD SKTDDSAAFA AAWKEACAAG STITVPKGEY MVESLEFKGP 120 CKGPVTLELN GNFKAPATVK TTKPHAGWID FENIADFTLN GNKAIFDGQG SLAWKANDCA 180 KTGKCNSLPI NIRFTGLTNS KINSITSTNS KLFHMNILNC KNITLSDIGI DAPPESLNTD 240 GIHIGRSNGV NLIGAKIKTG DDCVSIGDGT ENLIVENVEC GPGHGISIGS LGRYPNEQPV 300 KGVTVRKCLI KNTDNGVRIK TWPGSPPGIA SNILFEDITM DNVSLPVLID QEYCPYGHCK 360 AGVPSQVKLS DVTIKGIKGT SATKVAVKLM CSKGVPCTNI ALSDINLVHN GKEGPAVSAC 420 SNIKPILSGK LVPAACTEVA KPGP* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 2.0e-66 | 70 | 433 | 370 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-67 | 76 | 436 | 369 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-73 | 71 | 436 | 369 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-98 | 101 | 436 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-110 | 70 | 437 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL32525.1 | 0 | 1 | 444 | 1 | 445 | polygalacturonase; pectinase [Arabidopsis thaliana] |
| EMBL | CAA11160.1 | 0 | 1 | 444 | 1 | 445 | polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA51033.1 | 0 | 1 | 444 | 1 | 444 | exopolygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187442.1 | 0 | 1 | 444 | 1 | 444 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
| RefSeq | NP_188020.1 | 0 | 1 | 444 | 1 | 445 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-21 | 126 | 423 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-21 | 126 | 423 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-21 | 126 | 423 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-21 | 126 | 423 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-21 | 126 | 423 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
