| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G07970.1 |
| Family | GH28 |
| Protein Properties | Length: 440 Molecular Weight: 48572.2 Isoelectric Point: 8.7639 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2541006 End: 2543432 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 93 | 428 | 0 |
| WEAACSSTGIVYIVAPKNRDYMLKAVTFSGPCKSSLIIFKIYGRIEAWENPSDYKERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSCKINPQLPCLGA PTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISI GSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPEQKSAVQVSNVLYKNIQGTSSRPIAVKF VCSKNIPCRGISMQNVKLVDQTQQDVSKASCSNVKL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 440 Download |
| MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH 60 GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST GIVYIVAPKN RDYMLKAVTF 120 SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS 180 CKINPQLPCL GAPTAVTFVE CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS 240 PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS 300 EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV 360 EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC RGISMQNVKL VDQTQQDVSK 420 ASCSNVKLDT RGNVSPLCT* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-95 | 66 | 427 | 367 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 6.0e-107 | 66 | 436 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-116 | 97 | 427 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 6.0e-139 | 60 | 436 | 383 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-144 | 67 | 439 | 376 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009830 | cell wall modification involved in abscission |
| GO:0009901 | anther dehiscence |
| GO:0010047 | fruit dehiscence |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26512.1 | 0 | 12 | 438 | 15 | 458 | polygalacturonase precursor [Cucumis melo] |
| GenBank | AAF21207.1 | 0 | 1 | 439 | 1 | 438 | AC013483_31 putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_187454.2 | 0 | 1 | 439 | 1 | 439 | QRT2 (QUARTET 2); polygalacturonase [Arabidopsis thaliana] |
| RefSeq | XP_002313308.1 | 0 | 63 | 439 | 1 | 376 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 54 | 438 | 63 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-22 | 152 | 416 | 102 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 3e-18 | 146 | 423 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-18 | 146 | 423 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-18 | 146 | 423 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-18 | 146 | 423 | 55 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
