| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G09540.1 |
| Family | PL1 |
| Protein Properties | Length: 379 Molecular Weight: 41469.8 Isoelectric Point: 8.0994 |
| Chromosome | Chromosome/Scaffold: 3 Start: 2928811 End: 2931228 |
| Description | pectate lyase family protein, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 109 | 287 | 0 |
| VFDVSGTINLSSFVNVSSHTTVDGRGQKVKITGKGLRLKECENVIICNLEFEGGVGPDADAIQIKPKSHNIWIDRCSLKNYYDGLIDITRESTDITVSRC HFMNHNKTMLIGADTSHVTDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLFNNYTRHWAIYAVGAGVESQIHSQCNIYEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 379 Download |
| MGNLHGIHRS HHGGSNFPGE APNSPFPPPY TAAPAPAPAP SSPSDHHMTV GPYCHVDSSL 60 RSLAGKAEGF GRAAVGGLNG PICHVTSLAD EGPGSLREAC KRPEPLWIVF DVSGTINLSS 120 FVNVSSHTTV DGRGQKVKIT GKGLRLKECE NVIICNLEFE GGVGPDADAI QIKPKSHNIW 180 IDRCSLKNYY DGLIDITRES TDITVSRCHF MNHNKTMLIG ADTSHVTDRC IRVTIHHCFF 240 DGTRQRHPRV RFAKVHLFNN YTRHWAIYAV GAGVESQIHS QCNIYEAGEK KTVFKYITEK 300 AADKEKPGAG FVRSEGDLLL NGAKSCLSQG GERYVFSPIQ HYSEWTVESP TDILKNYLKH 360 STGWQNLPLP LDRPPTTA* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 5.0e-40 | 109 | 283 | 195 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 5.0e-50 | 57 | 356 | 322 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 2.0e-67 | 111 | 288 | 190 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0006499 | N-terminal protein myristoylation |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 374 | 1 | 382 | unknown [Populus trichocarpa] |
| RefSeq | NP_187565.1 | 0 | 1 | 378 | 1 | 378 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002277576.1 | 0 | 2 | 372 | 6 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 52 | 374 | 6 | 329 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 49 | 374 | 3 | 329 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 3e-38 | 57 | 323 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 3e-38 | 57 | 323 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 7e-28 | 121 | 285 | 127 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 2e-25 | 72 | 285 | 19 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 3e-23 | 97 | 361 | 38 | 320 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FY442268 | 287 | 1 | 287 | 0 |
| DY289690 | 305 | 52 | 352 | 0 |
| DW066041 | 300 | 72 | 370 | 0 |
| JG177860 | 305 | 68 | 371 | 0 |
| DY275282 | 326 | 48 | 372 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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