| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G10740.1 |
| Family | GH51 |
| Protein Properties | Length: 679 Molecular Weight: 75044.5 Isoelectric Point: 5.5206 |
| Chromosome | Chromosome/Scaffold: 3 Start: 3360888 End: 3365414 |
| Description | alpha-N-arabinofuranosidase A, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 216 | 666 | 0 |
| SARLQLTTTKKGSIWIDQVSAMPVDTHKGHGFRNDLFQMMADIKPRFIRFPGGCFVEGEWLSNAFRWKETVGPWEERPGHFGDVWKYWTDDGLGHFEFFQ MAEDIGAAPIWVFNNGISHNDEVETASIMPFVQEALDGIEFARGDANSTWGSVRAKMGRQEPFELKYVAIGNEDCGKTYYRGNYIVFYDAIKKAYPDIKI ISNCDGSSHPLDHPADYYDYHIYTSASNLFSMYHQFDRTSRKGPKAFVSEYAVTGKDAGTGSLLASLAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRW NPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGNSTSLVASAISWKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNV MDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKIRMPI | |||
| Full Sequence |
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| Protein Sequence Length: 679 Download |
| MDMESWKLLR SVCVLSFLLG SCFVYQSLRV VDAQEDPKPA VTLQVDASNG GGRPIPETLF 60 GIFFEEINHA GAGGLWAELV SNRGFEAGGQ NTPSNIWPWS IVGDHSSIYV ATDRSSCFER 120 NKIALRMDVL CDSKGCPSGG VGVYNPGYWG MNIEEGKKYK VALYVRSTGD IDLSVSLTSS 180 NGSRTLASEK IIASASDVSK WIKKEVLLEA KATDPSARLQ LTTTKKGSIW IDQVSAMPVD 240 THKGHGFRND LFQMMADIKP RFIRFPGGCF VEGEWLSNAF RWKETVGPWE ERPGHFGDVW 300 KYWTDDGLGH FEFFQMAEDI GAAPIWVFNN GISHNDEVET ASIMPFVQEA LDGIEFARGD 360 ANSTWGSVRA KMGRQEPFEL KYVAIGNEDC GKTYYRGNYI VFYDAIKKAY PDIKIISNCD 420 GSSHPLDHPA DYYDYHIYTS ASNLFSMYHQ FDRTSRKGPK AFVSEYAVTG KDAGTGSLLA 480 SLAEAAFLIG LEKNSDIVEM ASYAPLFVNT NDRRWNPDAI VFNSSHLYGT PSYWVQRFFA 540 ESSGATLLTS TLKGNSTSLV ASAISWKNNG KDYIRIKAVN FGANSENMQV LVTGLDPNVM 600 RVSGSKKTVL TSTNVMDENS FSQPEKVVPH ESLLELAEED MTVVLPPHSF SSFDLLKESA 660 KIRMPISDSS SHQKTTTV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 0.0009 | 493 | 651 | 178 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| COG3534 | AbfA | 2.0e-30 | 246 | 391 | 146 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 2.0e-39 | 489 | 649 | 171 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 7.0e-48 | 464 | 649 | 199 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005773 | vacuole |
| GO:0009044 | xylan 1,4-beta-xylosidase activity |
| GO:0009505 | plant-type cell wall |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0045493 | xylan catabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK50089.1 | 0 | 1 | 678 | 1 | 678 | AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana] |
| GenBank | AAO92261.1 | 0 | 1 | 678 | 1 | 678 | alpha-L-arabinofuranosidase [Arabidopsis thaliana] |
| RefSeq | NP_187685.1 | 0 | 1 | 678 | 1 | 678 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | NP_197984.2 | 0 | 1 | 678 | 1 | 674 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] |
| RefSeq | XP_002523672.1 | 0 | 36 | 672 | 35 | 675 | Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 2e-17 | 246 | 559 | 48 | 373 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 2e-17 | 246 | 559 | 48 | 373 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 2e-17 | 246 | 559 | 48 | 373 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 2e-17 | 246 | 559 | 48 | 373 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 2e-17 | 246 | 559 | 48 | 373 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-beta-xylosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| BX841311 | 333 | 1 | 333 | 0 |
| HO852683 | 414 | 246 | 655 | 0 |
| HO780740 | 400 | 274 | 670 | 0 |
| JG577027 | 333 | 103 | 435 | 0 |
| BX841311 | 37 | 310 | 346 | 0.99 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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