| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G14040.1 |
| Family | GH28 |
| Protein Properties | Length: 446 Molecular Weight: 45697.4 Isoelectric Point: 8.4286 |
| Chromosome | Chromosome/Scaffold: 3 Start: 4648348 End: 4650319 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 97 | 425 | 0 |
| ACAAGSTITVPKGEYLVESLEFKGPCKGPVTLELNGNFKAPATVKTTKPHAGWIDFENLADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLPINIRFT GLTNSKINSITSTNSKLFHMNILNCKNITLTDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYP NEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGIASNILFEDITMDNVSLPVLIDQEYCPYGHCKAGVPSKVKLSDVTIKNIKGTSATKVAVKLMCSKGV PCTNIALSDINLVHNGKEGPAVSACSNIK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 446 Download |
| MVGSHKASGV LLVLLVVMAT TIANGTPVVD TAKNAATAVE DTAKNAATAV GGAAASVGAK 60 VTGAKPGGAS LDVKASGAKG DGKTDDSAAF AAAWKEACAA GSTITVPKGE YLVESLEFKG 120 PCKGPVTLEL NGNFKAPATV KTTKPHAGWI DFENLADFTL NGNKAIFDGQ GSLAWKANDC 180 AKTGKCNSLP INIRFTGLTN SKINSITSTN SKLFHMNILN CKNITLTDIG IDAPPESLNT 240 DGIHIGRSNG VNLIGAKIKT GDDCVSIGDG TENLIVENVE CGPGHGISIG SLGRYPNEQP 300 VKGVTVRKCL IKNTDNGVRI KTWPGSPPGI ASNILFEDIT MDNVSLPVLI DQEYCPYGHC 360 KAGVPSKVKL SDVTIKNIKG TSATKVAVKL MCSKGVPCTN IALSDINLVH NGKEGPAVSA 420 CSNIKPILSG KLVPAACTEV AKPGP* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-67 | 69 | 434 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 8.0e-69 | 77 | 437 | 369 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 4.0e-75 | 71 | 437 | 370 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-98 | 102 | 437 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-112 | 72 | 438 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL32525.1 | 0 | 1 | 445 | 1 | 445 | polygalacturonase; pectinase [Arabidopsis thaliana] |
| EMBL | CAA11160.1 | 0 | 1 | 445 | 1 | 445 | polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA51033.1 | 0 | 1 | 445 | 1 | 444 | exopolygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA51692.1 | 0 | 1 | 445 | 1 | 445 | exopolygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_188020.1 | 0 | 1 | 445 | 1 | 445 | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-21 | 127 | 424 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-21 | 127 | 424 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-21 | 127 | 424 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-21 | 127 | 424 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-21 | 127 | 424 | 33 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
