| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G15720.2 |
| Family | GH28 |
| Protein Properties | Length: 453 Molecular Weight: 48859.2 Isoelectric Point: 4.9747 |
| Chromosome | Chromosome/Scaffold: 3 Start: 5325290 End: 5327639 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 46 | 373 | 0 |
| WEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTFRSCNNL RLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATV ENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTE IFLRDMKIETASSGSGQVAQGQCLNVRG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 453 Download |
| MKKTWFLNFS LFFLQIFTSS NALDVTQFGA VGDGVTDDSQ AFLKAWEAVC SGTGDGQFVV 60 PAGMTFMLQP LKFQGSCKST PVFVQMLGKL VAPSKGNWKG DKDQWILFTD IEGLVIEGDG 120 EINGQGSSWW EHKGSRPTFR SCNNLRLSGL THLDSPMAHI HISECNYVTI SSLRINAPES 180 SPNTDGIDVG ASSNVVIQDC IIATGDDCIA INSGTSNIHI SGIDCGPGHG ISIGSLGKDG 240 ETATVENVCV QNCNFRGTMN GARIKTWQGG SGYARMITFN GITLDNVENP IIIDQFYNGG 300 DSDNAKDRKS SAVEVSKVVF SNFIGTSKSE YGVDFRCSER VPCTEIFLRD MKIETASSGS 360 GQVAQGQCLN VRGASTIAVP GLECLELSTD MFSSAQLLEQ TCMSAQSVQP RTTTQPMQDP 420 IWVFQSRGKQ LRVYNIAILV SFISLVTYIL AR* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-87 | 50 | 371 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 7.0e-90 | 19 | 354 | 350 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-100 | 19 | 389 | 385 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 2.0e-120 | 6 | 376 | 375 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 0 | 1 | 452 | 455 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009505 | plant-type cell wall |
| GO:0010583 | response to cyclopentenone |
| GO:0031225 | anchored to membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABC75354.1 | 0 | 1 | 385 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| RefSeq | NP_001078162.1 | 0 | 1 | 452 | 1 | 452 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566524.1 | 0 | 2 | 452 | 3 | 456 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002266543.1 | 0 | 24 | 386 | 21 | 375 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324855.1 | 0 | 9 | 388 | 6 | 397 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-26 | 38 | 300 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-26 | 38 | 300 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-26 | 38 | 300 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-26 | 38 | 300 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-26 | 38 | 300 | 7 | 269 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
