| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G16850.1 |
| Family | GH28 |
| Protein Properties | Length: 456 Molecular Weight: 49124.4 Isoelectric Point: 5.6514 |
| Chromosome | Chromosome/Scaffold: 3 Start: 5748570 End: 5751297 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 71 | 415 | 0 |
| DKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGATILASPDPSHWDVVSPLPSYGRGIELPGKRYRSLINGDNLIDVVITGENGTFDGQGAAWWEWLESGS LNYSRPHIIEFVSSKHILISNLTFLNAPAINIHPVYCSQIHIRKVLIETSVDSPHVLGVAPDSSDNVCIEDSTINVGHDAVSLKSGWDQYGIHYGRPTTA VHIRNLRLKSPTGAGISFGSEMSGGVSDVTVERLNIHSSLIGVAFRTTRGRGGYIRNITISDVDLTSVDTAIVANGHTGSHPDDKFDRDALPVVTHIVMR NFTGVDIGVAGNLTGIGESPFTSICLADIHLQTRSEESWICSNVS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 456 Download |
| MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ 60 NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE KGATILASPD PSHWDVVSPL 120 PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE 180 FVSSKHILIS NLTFLNAPAI NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE 240 DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT 300 VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA 360 LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH LQTRSEESWI CSNVSGFSDD 420 VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-15 | 2 | 317 | 331 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-21 | 138 | 414 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 6.0e-22 | 37 | 374 | 356 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-26 | 38 | 423 | 398 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 2.0e-49 | 19 | 365 | 378 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005773 | vacuole |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009505 | plant-type cell wall |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM62920.1 | 0 | 3 | 455 | 1 | 453 | polygalacturonase, putative [Arabidopsis thaliana] |
| DDBJ | BAA95779.1 | 0 | 3 | 455 | 1 | 453 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_188308.1 | 0 | 1 | 455 | 1 | 455 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002314352.1 | 0 | 16 | 435 | 15 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002328589.1 | 0 | 1 | 438 | 1 | 439 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1e-34 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1e-34 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1e-34 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1e-34 | 38 | 398 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000004 | 84 | 415 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
