| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G24670.1 |
| Family | PL1 |
| Protein Properties | Length: 441 Molecular Weight: 48761.3 Isoelectric Point: 8.9738 |
| Chromosome | Chromosome/Scaffold: 3 Start: 9005939 End: 9008801 |
| Description | pectate lyase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 154 | 359 | 0 |
| IQDRPLWIVFKRDMVITLTQELIMNSFKTIDGRGVNVAIAGGACITIQYVTNIIIHGINVHDCRRTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWID HNSLSNCADGLIDAIMGSTAITISNNYMTHHNEVMLMGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQ GNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 441 Download |
| MVIFSRSFLA LSTTLIILAL CINSSTMAQE TEDLNSHSSS NSSTANKLPN DDGAWNEHAV 60 KNPEEVAAMV DMKIKNSTER RRLGFFSCAT GNPIDDCWRC DRNWHLRRKR LANCAIGFGR 120 NAIGGRDGRY YVVTDPSDHD AVNPRPGTLR HAVIQDRPLW IVFKRDMVIT LTQELIMNSF 180 KTIDGRGVNV AIAGGACITI QYVTNIIIHG INVHDCRRTG NAMVRSSPSH YGWRTMADGD 240 AISIFGSSHI WIDHNSLSNC ADGLIDAIMG STAITISNNY MTHHNEVMLM GHSDSYTRDK 300 LMQVTIAYNH FGEGLIQRMP RCRHGYFHVV NNDYTHWVMY AIGGSANPTI NSQGNRFLAP 360 GNPFAKEVTK RVGSWQGEWK QWNWRSQGDL MLNGAYFTKS GAAAPASYAR ASSLGAKPAS 420 VVSMLTYSSG ALKCRIGMRC * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-25 | 179 | 357 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-68 | 172 | 357 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-79 | 166 | 361 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008150 | biological_process |
| GO:0012505 | endomembrane system |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB01216.1 | 0 | 1 | 436 | 1 | 436 | pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_187357.1 | 0 | 55 | 440 | 31 | 416 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_189110.1 | 0 | 1 | 440 | 1 | 440 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193057.4 | 0 | 52 | 440 | 12 | 401 | lyase/ pectate lyase [Arabidopsis thaliana] |
| Swiss-Prot | Q9SVQ6 | 0 | 2 | 440 | 1 | 418 | PEL14_ARATH RecName: Full=Putative pectate lyase 14; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 92 | 432 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 92 | 432 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 3e-16 | 161 | 366 | 50 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000009 | 182 | 357 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.00000000000005 | 182 | 369 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
