| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G26610.1 |
| Family | GH28 |
| Protein Properties | Length: 471 Molecular Weight: 51083.5 Isoelectric Point: 9.651 |
| Chromosome | Chromosome/Scaffold: 3 Start: 9776960 End: 9780499 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 91 | 430 | 0 |
| KAACKVVGGKVEIPAGTQFLVKAVTLQGPCKEETVVQIEGILVAPEKIGSWPNSSLFQWLNFKWVSHLTIQGSGTLNGRGYNWWNLDTYQTQTRNKYIPP MKPTALRFYSSNNVTVRDISIVNSPLCHLKFDDSDGVKVNNITISSPENSPNTDGIHLQNTRNVEIQHSNIACGDDCVSIQTGSSNVHIHHINCGPGHGI SIGGLGKDKSVACVSDIIVEDISIQNTLAGVRIKTWQGGLGVVKNLTFSNIQVKDVKVPIVIDQYYCDKSKCKNQTRAVSISGVKYNNIVGSFTVQPVRI ACSNNVPCMDVDLMDIRLRPSGGIRGLQTHQQQQALCWNS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 471 Download |
| MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP 60 STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK VEIPAGTQFL VKAVTLQGPC 120 KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ 180 TQTRNKYIPP MKPTALRFYS SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS 240 PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS 300 VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS 360 KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD VDLMDIRLRP SGGIRGLQTH 420 QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-74 | 100 | 408 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 4.0e-74 | 62 | 432 | 377 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 3.0e-74 | 63 | 413 | 359 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 7.0e-80 | 68 | 440 | 378 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-99 | 53 | 460 | 412 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA66407.1 | 0 | 85 | 412 | 1 | 328 | polygalacturonase precursor homologue [Arabidopsis thaliana] |
| RefSeq | NP_189293.1 | 0 | 29 | 470 | 29 | 470 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266099.1 | 0 | 29 | 468 | 29 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002312682.1 | 0 | 31 | 469 | 31 | 467 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527898.1 | 0 | 1 | 468 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-30 | 81 | 359 | 37 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 3e-26 | 68 | 449 | 22 | 362 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 5e-17 | 158 | 400 | 72 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-17 | 158 | 400 | 72 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-17 | 158 | 400 | 72 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
