| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G42950.1 |
| Family | GH28 |
| Protein Properties | Length: 485 Molecular Weight: 54072.5 Isoelectric Point: 8.718 |
| Chromosome | Chromosome/Scaffold: 3 Start: 15015140 End: 15018071 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 96 | 445 | 0 |
| AKKGGGQLNVPPGRWLTAPFNLTSYMTLFLSENAEILALQDEKYWSLLPPLPSYGYGREHHGPRYGSFIHGQNLRDVVVTGNNGSINGQGQTWWKKYRQK LLNHTRGPLVQIMWSSDIVFANITLRDSPFWTLHPYDCKNVTITNMTILAPVFEAPNTDGIDPDSCEDMLIENSYISVGDDGIAIKSGWDQYGTTYGKPS KNILIRNLIIRSMVSAGISIGSEMSGGVSNITVENILIWSSRRGVRIKTAPGRGGYVRDITFRNVTLDELRVGIVIKTDYNEHPDGGFNPQAFPILENIN YTGIYGQGVRVPVRIQGSKEIPVKNVTFRDMSVGITYKKKHIFQCAYVEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 485 Download |
| MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK 60 LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG GQLNVPPGRW LTAPFNLTSY 120 MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS 180 INGQGQTWWK KYRQKLLNHT RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN 240 MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI 300 RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV 360 TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY GQGVRVPVRI QGSKEIPVKN 420 VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI 480 DYEI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 8.0e-27 | 63 | 428 | 383 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 5.0e-30 | 66 | 376 | 319 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 8.0e-31 | 59 | 456 | 417 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-37 | 163 | 443 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-62 | 65 | 385 | 346 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN28906.1 | 0 | 1 | 484 | 1 | 484 | At3g42950/F18P9_110 [Arabidopsis thaliana] |
| RefSeq | NP_189881.1 | 0 | 1 | 484 | 1 | 484 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324728.1 | 0 | 2 | 483 | 24 | 494 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 5 | 483 | 27 | 494 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 2 | 483 | 22 | 493 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 59 | 425 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 59 | 425 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 59 | 425 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 59 | 425 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-17 | 110 | 423 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
