| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G55140.1 |
| Family | PL1 |
| Protein Properties | Length: 332 Molecular Weight: 37186 Isoelectric Point: 7.4978 |
| Chromosome | Chromosome/Scaffold: 3 Start: 20438772 End: 20440429 |
| Description | pectate lyase family protein, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 62 | 240 | 0 |
| VFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNLEFEGGRGHDVDGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRC YFAQHDKTMLIGADPSHVEDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 332 Download |
| MTSLPYADAD CSLRALAGRA EGFGRFAVGG LHGDLYVVTS LADDGPGTLR EGGRRKEPLW 60 IVFAVSGTIN LNSYLSVSSY KTIDGRGQRI KLTGKGIRLK ECEHIIICNL EFEGGRGHDV 120 DGIQIKPKSR HIWIDRCSLR DYDDGLIDIT RQSTDITVSR CYFAQHDKTM LIGADPSHVE 180 DRCIRVTIHH CFFDGTRQRQ PRLRFGKVHL YNNYTRNWGI YAVCASVEAQ VFSQCNIYEA 240 GVKKKTFEYY SEKAADKEEA RTGLVRSEND LFLNGAQPSL MTGASEECVF HPSEHYPTWT 300 VEPPSETLKQ IMQICTGWQS LSRPSDHGVP K* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 2.0e-39 | 56 | 236 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 6.0e-49 | 28 | 307 | 299 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 9.0e-69 | 75 | 241 | 179 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB75748.1 | 0 | 1 | 331 | 1 | 341 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191074.2 | 0 | 1 | 331 | 1 | 331 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_974439.1 | 0 | 41 | 331 | 17 | 307 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002311134.1 | 0 | 1 | 325 | 1 | 325 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526780.1 | 0 | 1 | 312 | 1 | 312 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 2.00386e-43 | 16 | 294 | 21 | 324 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 2.00386e-43 | 16 | 294 | 21 | 324 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-26 | 28 | 238 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 1e-24 | 77 | 238 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 2e-22 | 57 | 239 | 46 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| JG177860 | 304 | 21 | 324 | 0 |
| DY275282 | 328 | 1 | 326 | 0 |
| DY277275 | 310 | 4 | 313 | 0 |
| DW066041 | 301 | 25 | 325 | 0 |
| DY277275 | 22 | 305 | 326 | 0.22 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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