| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G55140.2 |
| Family | PL1 |
| Protein Properties | Length: 308 Molecular Weight: 35059.8 Isoelectric Point: 7.1025 |
| Chromosome | Chromosome/Scaffold: 3 Start: 20438783 End: 20440427 |
| Description | pectate lyase family protein, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 38 | 216 | 0 |
| VFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNLEFEGGRGHDVDGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRC YFAQHDKTMLIGADPSHVEDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 308 Download |
| MHLLIVFEDL EIGYVWILDD GPGTLREGGR RKEPLWIVFA VSGTINLNSY LSVSSYKTID 60 GRGQRIKLTG KGIRLKECEH IIICNLEFEG GRGHDVDGIQ IKPKSRHIWI DRCSLRDYDD 120 GLIDITRQST DITVSRCYFA QHDKTMLIGA DPSHVEDRCI RVTIHHCFFD GTRQRQPRLR 180 FGKVHLYNNY TRNWGIYAVC ASVEAQVFSQ CNIYEAGVKK KTFEYYSEKA ADKEEARTGL 240 VRSENDLFLN GAQPSLMTGA SEECVFHPSE HYPTWTVEPP SETLKQIMQI CTGWQSLSRP 300 SDHGVPK* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 3.0e-39 | 32 | 212 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 9.0e-48 | 34 | 283 | 269 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 4.0e-68 | 51 | 217 | 179 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK92527.1 | 0 | 17 | 301 | 26 | 310 | unknown [Populus trichocarpa] |
| EMBL | CAB75748.1 | 0 | 1 | 307 | 35 | 341 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_191074.2 | 0 | 17 | 307 | 41 | 331 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_974439.1 | 0 | 1 | 307 | 1 | 307 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002311134.1 | 0 | 17 | 301 | 41 | 325 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 9e-37 | 22 | 272 | 55 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 9e-37 | 22 | 272 | 55 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-25 | 38 | 214 | 49 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 1e-24 | 53 | 214 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 3e-22 | 58 | 215 | 82 | 247 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG177860 | 284 | 17 | 300 | 0 |
| DW066041 | 285 | 17 | 301 | 0 |
| EB434087 | 263 | 17 | 279 | 0 |
| DY275282 | 286 | 19 | 302 | 0 |
| DY277275 | 271 | 19 | 289 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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