| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G57790.1 |
| Family | GH28 |
| Protein Properties | Length: 491 Molecular Weight: 54098.6 Isoelectric Point: 4.5821 |
| Chromosome | Chromosome/Scaffold: 3 Start: 21405387 End: 21407624 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 394 | 0 |
| RVVFPSGNYLTAKLHLRSGVILDVTENAVLLGGPRIEDYYPAETSSDWYVVVANNATDVGITGGGAIDGQGSKFVVRFDEKKNVMVSWNQTGACLGDECR PRLVGFVDSINVEIWNITLREPAYWCLHIVRCENTSVHDVSILGDFNTPNNDGIDIEDSNNTVITRCHIDTGDDAICPKTYTGPLYNLTATDCWIRTKSS AIKLGSASWFDFKGLVFDNITIFESHRGLGMQIRDGGNVSDVTFSNINISTRYYDPSWWGRAEPIYITTCPRDSSAKEGSISNLLFVNITIDSENGVFLS GSPNGLLSDIKFKNMNLTFRRW | |||
| Full Sequence |
|---|
| Protein Sequence Length: 491 Download |
| MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA 60 CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA VLLGGPRIED YYPAETSSDW 120 YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD 180 SINVEIWNIT LREPAYWCLH IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH 240 IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG 300 LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN 360 ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG LVDYRPGCQG LVNHRATSGI 420 IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV 480 MVGENNIAFA * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 2.0e-6 | 160 | 265 | 106 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 2.0e-7 | 34 | 403 | 403 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 1.0e-7 | 173 | 248 | 76 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-10 | 173 | 390 | 233 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-37 | 35 | 319 | 317 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005886 | plasma membrane |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL38256.1 | 0 | 1 | 310 | 1 | 310 | putative protein [Arabidopsis thaliana] |
| EMBL | CAB41176.1 | 0 | 1 | 481 | 1 | 481 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 1 | 490 | 1 | 490 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 5 | 469 | 8 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 24 | 474 | 1 | 445 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 5e-16 | 7 | 318 | 110 | 484 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2uvf_A | 5e-16 | 7 | 318 | 110 | 484 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2uve_B | 5e-16 | 7 | 318 | 110 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 5e-16 | 7 | 318 | 110 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 7e-16 | 27 | 252 | 22 | 267 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
