| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT3G59850.1 |
| Family | GH28 |
| Protein Properties | Length: 389 Molecular Weight: 41251 Isoelectric Point: 9.0903 |
| Chromosome | Chromosome/Scaffold: 3 Start: 22109164 End: 22111609 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 48 | 374 | 0 |
| KACASVKPVTILVPKGRFLLRSIIFDGSKCKRKSVTFRIQGTLVAPSDYRVIGKENYWILFQHLDGISVYGGVLDAQGASLWSCKKSGKNCPSGATSIGF QSSRNVVISGLTSLNSQMFHVAINGCSNVKLDGVKVSADGNSPNTDGIHVQSSSTVSILNSKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKE SVEVGVQNITVKTATFTGTENGVRIKSWARPSNGFAKNIRFQHCVMNNVQNPIVIDQNYCPGNENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDCSSK KPCTGIRIQDVKLTYRNKPATTDCSHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 389 Download |
| MHSSLLIVLL FLLSVSSSSA QTYNILSYGA KPDGKTDSTK AFTVLWAKAC ASVKPVTILV 60 PKGRFLLRSI IFDGSKCKRK SVTFRIQGTL VAPSDYRVIG KENYWILFQH LDGISVYGGV 120 LDAQGASLWS CKKSGKNCPS GATSIGFQSS RNVVISGLTS LNSQMFHVAI NGCSNVKLDG 180 VKVSADGNSP NTDGIHVQSS STVSILNSKI STGDDCVSIG PGTNGLWIEN VACGPGHGIS 240 IGSLGKESVE VGVQNITVKT ATFTGTENGV RIKSWARPSN GFAKNIRFQH CVMNNVQNPI 300 VIDQNYCPGN ENCPNQVSGI KISDVMFFDI HGTSATEVGV KLDCSSKKPC TGIRIQDVKL 360 TYRNKPATTD CSHAGGSEAG FQRPNSCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-87 | 22 | 384 | 373 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-89 | 50 | 368 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-90 | 28 | 388 | 369 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 5.0e-110 | 22 | 387 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 3.0e-144 | 23 | 388 | 367 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28534.1 | 0 | 3 | 388 | 2 | 384 | unknown [Arabidopsis thaliana] |
| EMBL | CAB75804.1 | 0 | 1 | 388 | 1 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 3 | 388 | 2 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_191544.2 | 0 | 1 | 388 | 1 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002529090.1 | 0 | 4 | 388 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-21 | 116 | 361 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1czf_B | 2e-18 | 50 | 371 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 2e-18 | 50 | 371 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1hg8_A | 0.000000000000002 | 47 | 338 | 12 | 309 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_B | 0.00000000000002 | 148 | 333 | 110 | 294 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
