| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G01890.1 |
| Family | GH28 |
| Protein Properties | Length: 469 Molecular Weight: 50805.5 Isoelectric Point: 7.9011 |
| Chromosome | Chromosome/Scaffold: 4 Start: 816210 End: 818428 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 93 | 422 | 0 |
| SNNKNNTASVLHVPYGFTFMIRSTIFTGPCRSYQYFQVDGTIVPRDGPKSWPSSLNKRQWLAFYRINGMALQGAGVIDGRGQNWWDLPCKPHQQNVNKTK LAGPCESPAALRFFMSSNVIVKGLSIKNSPQVHLKLDGCHVVHINSLRIISPPASPNTDGIHIENSNSVEIYNSVISNGDDCVSIGPGAYDIDIRNITCG PGGHGISIGSLGEKNSHACVSNVTVRDSFIKFSENGVRIKTWQGGSGSVSGVTFDNIHVDTVRNPIIIDQYYCTTKSCANKTSAVFVNDIVYQSIKGTYD IRSPPMHFGCSNNVPCTNLTLSNIELLPSK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 469 Download |
| MLKLSRDPIL CITTLILIIT FSLLSYGTEA RLHHQASQPP SPSPNPNDPS KSPSRSQDLD 60 HEVVYDVRKY GAVGNGVADD TVSFKTAWDS ACSNNKNNTA SVLHVPYGFT FMIRSTIFTG 120 PCRSYQYFQV DGTIVPRDGP KSWPSSLNKR QWLAFYRING MALQGAGVID GRGQNWWDLP 180 CKPHQQNVNK TKLAGPCESP AALRFFMSSN VIVKGLSIKN SPQVHLKLDG CHVVHINSLR 240 IISPPASPNT DGIHIENSNS VEIYNSVISN GDDCVSIGPG AYDIDIRNIT CGPGGHGISI 300 GSLGEKNSHA CVSNVTVRDS FIKFSENGVR IKTWQGGSGS VSGVTFDNIH VDTVRNPIII 360 DQYYCTTKSC ANKTSAVFVN DIVYQSIKGT YDIRSPPMHF GCSNNVPCTN LTLSNIELLP 420 SKEDIVVGPF CWNAYGITDE FSVPLISCLK SNPSTSLLSG LSGRCGSP* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-74 | 65 | 434 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 5.0e-78 | 66 | 450 | 392 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-85 | 96 | 431 | 341 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 8.0e-93 | 67 | 418 | 355 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-111 | 62 | 438 | 379 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD22651.1 | 0 | 1 | 468 | 1 | 452 | AC007138_15 putative polygalacturonidase [Arabidopsis thaliana] |
| EMBL | CBI37004.1 | 0 | 64 | 465 | 88 | 484 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_192098.2 | 0 | 1 | 468 | 1 | 468 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_563654.1 | 0 | 60 | 467 | 84 | 490 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002515219.1 | 0 | 64 | 465 | 141 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 3e-27 | 130 | 422 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-27 | 130 | 422 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-27 | 130 | 422 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-27 | 130 | 422 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 3e-27 | 130 | 422 | 40 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DW479564 | 327 | 72 | 398 | 0 |
| EV124391 | 242 | 191 | 432 | 0 |
| DR450143 | 295 | 113 | 407 | 0 |
| DY277859 | 371 | 62 | 428 | 0 |
| GR169315 | 264 | 150 | 413 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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