| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G08160.2 |
| Family | CBM22 |
| Protein Properties | Length: 662 Molecular Weight: 74401.4 Isoelectric Point: 6.4067 |
| Chromosome | Chromosome/Scaffold: 4 Start: 5159034 End: 5162774 |
| Description | glycosyl hydrolase family 10 protein, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 27 | 162 | 1.9e-31 |
| IILNPNFEDGLNNWTGRACKIVLHESMDSGKIVPLSGKVFAAATQRKDTWNGIQQEISGRFRRKRVYEVTAVVRIFGNNVTSATVQATLWVLNANKREQY IVIANVQATDKNWVELKGKFVIHGSPSRVILYLEGP | |||
| CBM22 | 197 | 344 | 7.6e-40 |
| NIVENSEVLDGGTKPWFTLGNCKLSVGQGAPRTLPPMARDTLGPHKPLGGNYIVVTNRTQTWMGPAQMITDKIKLFLTYQISAWVKLGVGVSGSSMSPQN VNIALSVDNQWVNGGQVEVTVGDTWHEIAGSFRLEKQPQNVMVYVQGP | |||
| GH10 | 404 | 657 | 0 |
| KQTYNSFPVGTCINRTDIDNEDFVDFFTKNFNWAVFGNELKWYATEAERGKVNYQDADDMLDLCIGNNINVRGHCIFWEVESTVQPWVRQLNKTDLMNAV QKRLTDLLTRYKGKFKHYDVNNEMLHGSFYQDRLGKGVRALMFNIAHKLDPSPLLFVNDYHVEDGDDPRSSPEKYIKLVLDLEAQGATVGGIGIQGHIDS PVGAIVCSALDMLSVLGRPIWFTELDVSSSNEYVRGEDLEVMLWEAFAHPSVEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 662 Download |
| MEKNTNTNHT SDDNNDKNHT NEEQEKIILN PNFEDGLNNW TGRACKIVLH ESMDSGKIVP 60 LSGKVFAAAT QRKDTWNGIQ QEISGRFRRK RVYEVTAVVR IFGNNVTSAT VQATLWVLNA 120 NKREQYIVIA NVQATDKNWV ELKGKFVIHG SPSRVILYLE GPPPRADILL NSLVVQHAKR 180 NRPSPPPFYE NPGFGVNIVE NSEVLDGGTK PWFTLGNCKL SVGQGAPRTL PPMARDTLGP 240 HKPLGGNYIV VTNRTQTWMG PAQMITDKIK LFLTYQISAW VKLGVGVSGS SMSPQNVNIA 300 LSVDNQWVNG GQVEVTVGDT WHEIAGSFRL EKQPQNVMVY VQGPGAGIDL MIAALQIFPV 360 DRRERVRCLK RQVDEVRKRD IVLKFSGLND DESFDLFPYI VKVKQTYNSF PVGTCINRTD 420 IDNEDFVDFF TKNFNWAVFG NELKWYATEA ERGKVNYQDA DDMLDLCIGN NINVRGHCIF 480 WEVESTVQPW VRQLNKTDLM NAVQKRLTDL LTRYKGKFKH YDVNNEMLHG SFYQDRLGKG 540 VRALMFNIAH KLDPSPLLFV NDYHVEDGDD PRSSPEKYIK LVLDLEAQGA TVGGIGIQGH 600 IDSPVGAIVC SALDMLSVLG RPIWFTELDV SSSNEYVRGE DLEVMLWEAF AHPSVEGTER 660 E* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 2.0e-16 | 27 | 164 | 139 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 9.0e-17 | 196 | 344 | 155 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 6.0e-30 | 441 | 631 | 203 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| smart00633 | Glyco_10 | 2.0e-68 | 443 | 657 | 233 | + Glycosyl hydrolase family 10. | ||
| pfam00331 | Glyco_hydro_10 | 7.0e-83 | 402 | 657 | 274 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005575 | cellular_component |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0031176 | endo-1,4-beta-xylanase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC42019.1 | 0 | 1 | 657 | 1 | 657 | putative xylan endohydrolase [Arabidopsis thaliana] |
| RefSeq | NP_001031593.1 | 0 | 1 | 661 | 1 | 661 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| RefSeq | NP_176133.1 | 1e-27 | 12 | 357 | 15 | 347 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_176133.1 | 0 | 23 | 657 | 195 | 821 | RXF12; endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_192556.2 | 0 | 1 | 657 | 1 | 657 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1i1x_A | 7e-27 | 433 | 637 | 39 | 249 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
| PDB | 1i1w_A | 7e-27 | 433 | 637 | 39 | 249 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 5e-26 | 433 | 637 | 39 | 249 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1gor_A | 1e-25 | 441 | 637 | 47 | 249 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1goq_A | 1e-25 | 441 | 637 | 47 | 249 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB442796 | 306 | 225 | 530 | 0 |
| GO850973 | 330 | 328 | 657 | 0 |
| GW865493 | 313 | 300 | 612 | 0 |
| DR014476 | 306 | 337 | 639 | 0 |
| EB442796 | 116 | 60 | 175 | 0.0005 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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