| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G13210.1 |
| Family | PL1 |
| Protein Properties | Length: 402 Molecular Weight: 44558.3 Isoelectric Point: 8.6699 |
| Chromosome | Chromosome/Scaffold: 4 Start: 7670044 End: 7673135 |
| Description | pectate lyase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 119 | 320 | 0 |
| PLWIVFKRDMVITLSQELIMNSFKTIDGRGVNVHIAGGACLTVQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIFGSSHIWIDHNSL SSCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRDKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF LA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 402 Download |
| MRAQEIHQRL SDGEWHEHAV KDPEEIAAMV DMSIRNSTYR RKLGFFSSCS TGNPIDDCWR 60 CDKKWHRRRK RLADCAIGFG RNAVGGRDGR YYIVTDPSDH DPVTPKPGTL RYAVIQDEPL 120 WIVFKRDMVI TLSQELIMNS FKTIDGRGVN VHIAGGACLT VQYVTNIIIH GINIHDCKRT 180 GNAMVRSSES HYGWRTMADG DGISIFGSSH IWIDHNSLSS CADGLIDAIM GSTAITISNN 240 YLTHHNEAIL LGHTDSYTRD KMMQVTIAYN HFGEGLIQRM PRCRHGYFHV VNNDYTHWEM 300 YAIGGSANPT INSQGNRFLA PGNRFAKEVT KRVGAGKGEW NNWNWRSQGD LMLNGAYFTS 360 SGAGASANYA RASSLAAKSS SLVGMLTSSS GALKCRIGTL C* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam05048 | NosD | 0.003 | 143 | 251 | 110 | + Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain. | ||
| COG3866 | PelB | 3.0e-24 | 140 | 318 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-67 | 134 | 318 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-77 | 127 | 322 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008150 | biological_process |
| GO:0012505 | endomembrane system |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB01216.1 | 0 | 12 | 397 | 52 | 436 | pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_187357.1 | 0 | 11 | 401 | 27 | 416 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_189110.1 | 0 | 12 | 401 | 52 | 440 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193057.4 | 0 | 1 | 401 | 1 | 401 | lyase/ pectate lyase [Arabidopsis thaliana] |
| Swiss-Prot | Q9SVQ6 | 0 | 10 | 401 | 27 | 418 | PEL14_ARATH RecName: Full=Putative pectate lyase 14; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 53 | 393 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 53 | 393 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.00000000000001 | 72 | 327 | 2 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000004 | 143 | 318 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.00000000000007 | 143 | 330 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778688 | 386 | 17 | 402 | 0 |
| DY025641 | 285 | 41 | 325 | 0 |
| DY304505 | 326 | 9 | 333 | 0 |
| FG606120 | 348 | 20 | 367 | 0 |
| CK262438 | 298 | 65 | 362 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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