| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G13210.2 |
| Family | PL1 |
| Protein Properties | Length: 439 Molecular Weight: 48547.9 Isoelectric Point: 8.5414 |
| Chromosome | Chromosome/Scaffold: 4 Start: 7669948 End: 7673376 |
| Description | pectate lyase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 156 | 357 | 0 |
| PLWIVFKRDMVITLSQELIMNSFKTIDGRGVNVHIAGGACLTVQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIFGSSHIWIDHNSL SSCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRDKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF LA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 439 Download |
| MVVARTLFSI SATLIIFLAL FLHVNAVQET REPKHESSRN TSTVDNLSDG EWHEHAVKDP 60 EEIAAMVDMS IRNSTYRRKL GFFSSCSTGN PIDDCWRCDK KWHRRRKRLA DCAIGFGRNA 120 VGGRDGRYYI VTDPSDHDPV TPKPGTLRYA VIQDEPLWIV FKRDMVITLS QELIMNSFKT 180 IDGRGVNVHI AGGACLTVQY VTNIIIHGIN IHDCKRTGNA MVRSSESHYG WRTMADGDGI 240 SIFGSSHIWI DHNSLSSCAD GLIDAIMGST AITISNNYLT HHNEAILLGH TDSYTRDKMM 300 QVTIAYNHFG EGLIQRMPRC RHGYFHVVNN DYTHWEMYAI GGSANPTINS QGNRFLAPGN 360 RFAKEVTKRV GAGKGEWNNW NWRSQGDLML NGAYFTSSGA GASANYARAS SLAAKSSSLV 420 GMLTSSSGAL KCRIGTLC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam05048 | NosD | 0.004 | 180 | 288 | 110 | + Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain. | ||
| COG3866 | PelB | 6.0e-24 | 177 | 355 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 7.0e-67 | 171 | 355 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-77 | 164 | 359 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008150 | biological_process |
| GO:0012505 | endomembrane system |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX88800.1 | 0 | 2 | 438 | 3 | 437 | ripening-related pectate lyase [Mangifera indica] |
| DDBJ | BAB01216.1 | 0 | 1 | 434 | 2 | 436 | pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_189110.1 | 0 | 1 | 438 | 2 | 440 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_193057.4 | 0 | 47 | 438 | 10 | 401 | lyase/ pectate lyase [Arabidopsis thaliana] |
| Swiss-Prot | Q9SVQ6 | 0 | 1 | 438 | 1 | 418 | PEL14_ARATH RecName: Full=Putative pectate lyase 14; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 90 | 430 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 90 | 430 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.00000000000002 | 109 | 364 | 2 | 255 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000006 | 180 | 355 | 135 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.00000000000007 | 180 | 367 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
