| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G13710.2 |
| Family | PL1 |
| Protein Properties | Length: 452 Molecular Weight: 49889.5 Isoelectric Point: 7.9451 |
| Chromosome | Chromosome/Scaffold: 4 Start: 7962430 End: 7966518 |
| Description | pectate lyase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 165 | 370 | 0 |
| IQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWID HNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQ GNRYAA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 452 Download |
| MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE EFQSLNSSTM AATRLDGEPQ 60 QQQHAVADDP DMVADEVAKL VQMSEQNRTA RRKLGFFSCG TGNPIDDCWR CDRNWHKNRK 120 RLADCGIGFG RNAIGGRDGR FYIVTDPTDE DVVNPKPGTL RHAVIQEEPL WIVFKRDMVI 180 ELKQELIMNS FKTIDARGSN VHIANGACIT IQFITNVIIH GLHIHDCKPT GNAMVRSSPS 240 HFGWRTMADG DAVSIFGSSH IWIDHNSLSH CADGLVDAVM GSTAITVSNN HFTHHNEVML 300 LGHSDSYTKD KLMQVTIAYN HFGEGLVQRM PRCRHGYFHV VNNDYTHWEM YAIGGSAEPT 360 INSQGNRYAA PMDRFAKEVT KRVETDASEW KKWNWRSEGD LLLNGAFFRP SGAGASASYG 420 RASSLAAKPS SMVDTITSTA GALGCRKGRP C* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-27 | 190 | 366 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-71 | 183 | 368 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-81 | 177 | 371 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008150 | biological_process |
| GO:0012505 | endomembrane system |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ADD62392.1 | 0 | 30 | 451 | 29 | 445 | pectase lyase [Prunus persica] |
| DDBJ | BAF43573.1 | 0 | 29 | 451 | 8 | 425 | pectate lyase [Prunus persica] |
| EMBL | CAB36835.1 | 0 | 84 | 451 | 7 | 374 | putative pectate lyase A11 (fragment) [Arabidopsis thaliana] |
| RefSeq | NP_189065.2 | 0 | 1 | 451 | 1 | 451 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567409.1 | 0 | 1 | 451 | 1 | 470 | pectate lyase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 103 | 443 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 103 | 443 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-16 | 172 | 359 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.00000000000006 | 251 | 373 | 190 | 335 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.000000000004 | 183 | 368 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
