y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT4G13760.1 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 44214.5 Isoelectric Point: 8.7463 |
Chromosome | Chromosome/Scaffold: 4 Start: 7988058 End: 7989648 |
Description | polygalacturonase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 393 | 0 |
RACRRKSGSSKIYVPKGTFYLGGVEFVGPCKNPIEFLIDGTLLAPANPNNIKQDTWIKFKYINDLSISGSGTLDGQGKQSWPLNDCHKNPNCPKLAMTMG FAFVNNSNIKDITSLNSKMGHFNFFSVHHFNITGVTITAPGNSPNTDGIKMGSCSNIHISNTNIGTGDDCIAILSGTTNLDISNVNCGPGHGISVGSLGK NKDEKDVKDLTIRDVIFNGTSDGIRIKTWESSASKILVSNFLYENIQMIDVGKPINIDQKYCPHPPCEHEQKGESHVQIQNLKLKNIYGTSKNKVAVNLQ CSKRFPCKNIELIDINITNNGLVDSFSTLVCENVDGSV |
Full Sequence |
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Protein Sequence Length: 405 Download |
MTSVVFAFKV LCVSFLFIVV ASRPTIRPKM FNVQRHGSKS DGKTDNTNVF TSVWNRACRR 60 KSGSSKIYVP KGTFYLGGVE FVGPCKNPIE FLIDGTLLAP ANPNNIKQDT WIKFKYINDL 120 SISGSGTLDG QGKQSWPLND CHKNPNCPKL AMTMGFAFVN NSNIKDITSL NSKMGHFNFF 180 SVHHFNITGV TITAPGNSPN TDGIKMGSCS NIHISNTNIG TGDDCIAILS GTTNLDISNV 240 NCGPGHGISV GSLGKNKDEK DVKDLTIRDV IFNGTSDGIR IKTWESSASK ILVSNFLYEN 300 IQMIDVGKPI NIDQKYCPHP PCEHEQKGES HVQIQNLKLK NIYGTSKNKV AVNLQCSKRF 360 PCKNIELIDI NITNNGLVDS FSTLVCENVD GSVSGKMVPQ HCIN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-77 | 1 | 404 | 407 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-77 | 23 | 400 | 385 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-78 | 24 | 404 | 393 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-92 | 65 | 389 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-113 | 30 | 402 | 377 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0012505 | endomembrane system |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB36840.1 | 0 | 30 | 404 | 1 | 375 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_179147.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_179149.2 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_181560.1 | 0 | 1 | 404 | 1 | 404 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_193112.2 | 0 | 1 | 404 | 1 | 404 | polygalacturonase [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 109 | 367 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 5e-16 | 127 | 373 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-16 | 127 | 373 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-16 | 127 | 373 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-16 | 127 | 373 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |