| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G17180.1 |
| Family | CBM43 |
| Protein Properties | Length: 476 Molecular Weight: 51811.1 Isoelectric Point: 6.0361 |
| Chromosome | Chromosome/Scaffold: 4 Start: 9646505 End: 9648295 |
| Description | glucan endo-1,3-beta-glucosidase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 359 | 438 | 1.6e-27 |
| WCVAHPSRDMTQVGDHLRLACSEADCTTLNDGGSCSQLGEKDNISYAFNSYYQMQMQHEKSCDFDGLGMVTFLDPSVGDC | |||
| GH17 | 25 | 338 | 0 |
| IGVNWGTLSFHKMRPSTVVDLLKANKITKVKLFDANPDALRALMGTGIQVMIGIPNEMLSTFNSDLFVQQNLSRFIGKNGADIRYVAVGNEPFLTGYGGQ FQNYVVPTMVNLQQSLVRANLASYVKLVVPCNADAYQSNVPSQGMFRPELTQIMTQLVSFLNSNGSPFVVNIYPFLSLYGNSDFPQDYAFFEGSSHPVPD GPNTYYNAFDGNFDTLVAALTKLGYGQMPIVIGEIGWPTDGAVGANLTAARVFNQGLISHVLSNKGTPLRPGSPPADVYLFGLLDEGAKSTLPGNFERHW GIFSFDGQAKYRLN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 476 Download |
| MGSGVGVALF ALSLLLVSHE VESAIGVNWG TLSFHKMRPS TVVDLLKANK ITKVKLFDAN 60 PDALRALMGT GIQVMIGIPN EMLSTFNSDL FVQQNLSRFI GKNGADIRYV AVGNEPFLTG 120 YGGQFQNYVV PTMVNLQQSL VRANLASYVK LVVPCNADAY QSNVPSQGMF RPELTQIMTQ 180 LVSFLNSNGS PFVVNIYPFL SLYGNSDFPQ DYAFFEGSSH PVPDGPNTYY NAFDGNFDTL 240 VAALTKLGYG QMPIVIGEIG WPTDGAVGAN LTAARVFNQG LISHVLSNKG TPLRPGSPPA 300 DVYLFGLLDE GAKSTLPGNF ERHWGIFSFD GQAKYRLNLG LGNRGLKNAK NVQYLPSRWC 360 VAHPSRDMTQ VGDHLRLACS EADCTTLNDG GSCSQLGEKD NISYAFNSYY QMQMQHEKSC 420 DFDGLGMVTF LDPSVGDCRF LVGVTDIGLS SSTEPMARWS IYHICIGLLI WTLTM* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.002 | 164 | 330 | 176 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 9.0e-20 | 358 | 427 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-31 | 359 | 440 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 2.0e-72 | 25 | 335 | 318 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| GO:0043169 | cation binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD65105.1 | 0 | 4 | 474 | 2 | 470 | glycosyl hydrolase family protein [Brassica oleracea] |
| EMBL | CAB10499.1 | 0 | 1 | 475 | 28 | 502 | glucanase like protein [Arabidopsis thaliana] |
| RefSeq | NP_193451.2 | 0 | 1 | 475 | 1 | 475 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002329964.1 | 0 | 10 | 475 | 11 | 484 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525026.1 | 0 | 3 | 473 | 2 | 472 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3f55_D | 9.80909e-45 | 40 | 339 | 17 | 315 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
| PDB | 3f55_C | 9.80909e-45 | 40 | 339 | 17 | 315 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
| PDB | 3f55_B | 9.80909e-45 | 40 | 339 | 17 | 315 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
| PDB | 3f55_A | 9.80909e-45 | 40 | 339 | 17 | 315 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
| PDB | 3em5_D | 9.80909e-45 | 40 | 339 | 17 | 315 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
