y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT4G18180.1 |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 44994 Isoelectric Point: 9.3439 |
Chromosome | Chromosome/Scaffold: 4 Start: 10065626 End: 10067317 |
Description | polygalacturonase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 402 | 0 |
KACKSSSSSVNLIIPRGEFSVGSLRFSGPCTNVSNLTVRVKASTDLSKYRSGGGWIQFGWINGLTLTGGGTFDGQGALAWPFNNCTSDSNCKLLPTSLKF VGMNRTVVRRISSVNSKFFHIALVECRDFKGTRLNITAPSDSPNTDGIHIERSSNVYFSRSHIATGDDCVSIGQGNSQITITSIKCGPGHGISVGSLGRY PNEKDVNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNPIIIDQSYCPFSSCISNVPSKVELSEIYFKNIRGTSSSLVAVQLHCSR GMPCKKVYLENVHLDLSSSDGGRKQSSNRGNEAVSSSCRNVRA |
Full Sequence |
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Protein Sequence Length: 415 Download |
MENFRYLKFF FFFIFVILSP SEAGNIVDKS SVFLVDVRSF GARANDHRDH TKAFVAAWDK 60 ACKSSSSSVN LIIPRGEFSV GSLRFSGPCT NVSNLTVRVK ASTDLSKYRS GGGWIQFGWI 120 NGLTLTGGGT FDGQGALAWP FNNCTSDSNC KLLPTSLKFV GMNRTVVRRI SSVNSKFFHI 180 ALVECRDFKG TRLNITAPSD SPNTDGIHIE RSSNVYFSRS HIATGDDCVS IGQGNSQITI 240 TSIKCGPGHG ISVGSLGRYP NEKDVNGLVV KDCKISGTTN GIRIKTWANS PGLSAATNMT 300 FENIIMNNVT NPIIIDQSYC PFSSCISNVP SKVELSEIYF KNIRGTSSSL VAVQLHCSRG 360 MPCKKVYLEN VHLDLSSSDG GRKQSSNRGN EAVSSSCRNV RANYIGTQIP PPCH* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 8.0e-67 | 27 | 413 | 390 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-71 | 37 | 413 | 385 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-73 | 35 | 397 | 369 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-81 | 64 | 373 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 2 | 414 | 416 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0012505 | endomembrane system |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 53 | 414 | 1 | 362 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 19 | 413 | 41 | 387 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 1 | 414 | 1 | 414 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 19 | 413 | 41 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 31 | 413 | 39 | 409 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-24 | 127 | 373 | 115 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000000002 | 96 | 360 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000002 | 96 | 360 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000002 | 96 | 360 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000002 | 96 | 360 | 44 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |