| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G18240.1 |
| Family | GT5 |
| Protein Properties | Length: 1041 Molecular Weight: 117747 Isoelectric Point: 5.7987 |
| Chromosome | Chromosome/Scaffold: 4 Start: 10082108 End: 10087203 |
| Description | starch synthase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 544 | 1027 | 0 |
| VVHIAAEMAPVAKVGGLGDVVAGLGKALQRKGHLVEIILPKYDCMQYDRVRDLRALDTVVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQF YGEQDDFRRFSYFSRAALELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLDSARICFTCHNFEYQGTASASELGSCGLDVNQLNRPDRMQDHSSGD RVNPVKGAIIFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKKFIGILNGIDTDSWNPATDPFLKAQFNAKDLQGKEENKHALRKQLGLSSAESRRPL VGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQQFKSHDHVRLLLKYDEALSHTIYAASDLFIIPSIFEPCGLTQMIAMRYGS IPIARKTGGLNDSVFDIDDDTIPTQFQNGFTFQTADEQGFNYALERAFNHYKKDEEKWMRLVEKVMSIDFSWGSSATQYEELYT | |||
| Full Sequence |
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| Protein Sequence Length: 1041 Download |
| MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK 60 KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE KGSSIHGSID MNHADENLEK 120 KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI 180 SDGQFGELMT MIRSAEKNIL RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER 240 IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK 300 SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET 360 LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN VYKESSEKIQ QYNELMQHKV 420 TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL 480 LTVDGWLLEK KIASNDADLL RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS 540 GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD 600 TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA 660 LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA RICFTCHNFE YQGTASASEL 720 GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS 780 TLNFHSKKFI GILNGIDTDS WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR 840 RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH 900 VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI 960 DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK WMRLVEKVMS IDFSWGSSAT 1020 QYEELYTRSV SRARAVPNRT * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 1.0e-142 | 542 | 1026 | 492 | + synthase/transferase | ||
| PRK00654 | glgA | 2.0e-180 | 542 | 1026 | 487 | + glycogen synthase; Provisional | ||
| PLN02939 | PLN02939 | 0 | 2 | 1039 | 1039 | + transferase, transferring glycosyl groups | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 544 | 1026 | 488 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 0 | 542 | 1029 | 493 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005982 | starch metabolic process |
| GO:0009058 | biosynthetic process |
| GO:0009507 | chloroplast |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16796.1 | 0 | 1 | 1040 | 1 | 1071 | starch synthase-like protein [Arabidopsis thaliana] |
| EMBL | CAB40375.1 | 0 | 191 | 1035 | 1 | 870 | starch synthase, isoform V [Vigna unguiculata] |
| RefSeq | NP_193558.3 | 0 | 1 | 1040 | 1 | 1040 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002274716.1 | 0 | 1 | 1036 | 1 | 1008 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298514.1 | 0 | 154 | 1039 | 1 | 887 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3guh_A | 0 | 544 | 1028 | 3 | 475 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
| PDB | 2r4u_A | 0 | 544 | 1028 | 3 | 475 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
| PDB | 2r4t_A | 0 | 544 | 1028 | 3 | 475 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
| PDB | 2qzs_A | 0 | 544 | 1028 | 3 | 475 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| PDB | 3d1j_A | 0 | 544 | 1028 | 3 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| GO851132 | 333 | 617 | 949 | 0 |
| CF828776 | 286 | 667 | 952 | 0 |
| GW865616 | 298 | 648 | 945 | 0 |
| EL448877 | 316 | 470 | 785 | 0 |
| CB893818 | 281 | 541 | 821 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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