| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G23820.1 |
| Family | GH28 |
| Protein Properties | Length: 445 Molecular Weight: 48635.2 Isoelectric Point: 8.659 |
| Chromosome | Chromosome/Scaffold: 4 Start: 12397038 End: 12400091 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 72 | 418 | 0 |
| RRGGTLLYIPPGVYLTESFNLTSHMTLYLAKGAVIRAVQDTWNWPLIDPLPSYGRGRELPGGRYMSFIHGDGLRDVVITGQNGTIDGQGEVWWNMWRSRT LKYTRPNLIEFKDSKEIIISNVIFQNSPFWNIHPVYCSNVVIHHVTILAPQDSPNTDGIDPDSSYNVCIEDSYISTGDDLVAIKSGWDQYGIAYGRPSSN ITIRRITGSSPFAGIAIGSETSGGIKNIIAEHITLSNMGVGVNIKTNIGRGGYIKNIKISDVYVDTAKYGIKIAGDTGDHPDENYNPNALPVVKGIHIKN VWGVNVRNAGSIQGLKGSPFTGICLSEINLHGSLNSYKTWKCSDVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF 60 RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL AKGAVIRAVQ DTWNWPLIDP 120 LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI 180 EFKDSKEIII SNVIFQNSPF WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI 240 EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII 300 AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA 360 LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN LHGSLNSYKT WKCSDVSGTS 420 LKVSPWPCSE LRTTGGSNLC SSTF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 3.0e-23 | 43 | 428 | 412 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 3.0e-25 | 39 | 433 | 414 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 3.0e-29 | 41 | 403 | 374 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-34 | 138 | 416 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-52 | 42 | 403 | 393 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 1 | 444 | 1 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 1 | 442 | 1 | 445 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 1 | 444 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 34 | 444 | 1 | 412 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 11 | 441 | 13 | 443 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2.94273e-44 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2.94273e-44 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2.94273e-44 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2.94273e-44 | 40 | 404 | 27 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-19 | 84 | 335 | 51 | 301 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
