| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G24780.2 |
| Family | PL1 |
| Protein Properties | Length: 409 Molecular Weight: 45013.9 Isoelectric Point: 8.2374 |
| Chromosome | Chromosome/Scaffold: 4 Start: 12770331 End: 12772479 |
| Description | pectate lyase precursor, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 127 | 327 | 0 |
| LWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSFS NCEDGLIDAIMGSTAITLSNNHMTHHDKVMLLGHSDTYSRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFL A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 409 Download |
| MKMQTKKLFI TIVSFLLYAP LFLSSPVPDP ESVVEEVHKS INASVAGRRK LGYLSCTTGN 60 PIDDCWRCDP HWEQHRQRLA DCAIGFGKNA IGGRDGRIYV VTDSGNDNPV SPKPGTLRHA 120 VVQDEPLWII FQRDMTIQLK EELIMNSFKT IDGRGASVHI SGGPCITIQY VTNIIIHGIH 180 IHDCKQGGNA MVRSSPRHFG WRTISDGDGV SIFGGSHVWV DHCSFSNCED GLIDAIMGST 240 AITLSNNHMT HHDKVMLLGH SDTYSRDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN 300 DYTHWEMYAI GGSANPTINS QGNRFLAPNI RFSKEVTKHE DAPESEWKRW NWRSSGDLLL 360 NGAFFTPSGG AASSSYAKAS SLGAKPSSLV GPLTSTSGAL NCRKGSRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-26 | 147 | 325 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-73 | 140 | 325 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-81 | 134 | 329 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008150 | biological_process |
| GO:0016020 | membrane |
| GO:0016829 | lyase activity |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK25850.1 | 0 | 1 | 408 | 1 | 408 | AF360140_1 putative pectate lyase [Arabidopsis thaliana] |
| GenBank | AAM65103.1 | 0 | 3 | 408 | 1 | 406 | putative pectate lyase [Arabidopsis thaliana] |
| EMBL | CAA22985.1 | 0 | 3 | 408 | 1 | 404 | putative pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_567707.1 | 0 | 1 | 408 | 1 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002322215.1 | 0 | 21 | 408 | 19 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 60 | 400 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 60 | 400 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-18 | 129 | 327 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 0.000000000000007 | 132 | 337 | 135 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 0.00000000000002 | 132 | 337 | 135 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
