| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G32370.1 |
| Family | GH28 |
| Protein Properties | Length: 343 Molecular Weight: 38134.1 Isoelectric Point: 7.2593 |
| Chromosome | Chromosome/Scaffold: 4 Start: 15625558 End: 15627517 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 66 | 326 | 0 |
| TPNGSALVIRKNETYTLQPSTFRGPCVSSNIHIQIDGKLEGPRKPIYWKNKENRSWLGFKDVEGLVINGSGVLNPHGEAWWKSVSLSKRPTTISFASCMD IVYNGLHHINSPRNHISIYGCTNATLSNLDISAPEDSPNTDGINICLSHRIQILDSSIQTGDDCVAITGGRGGSSDINITGVACGPGHGISIGSLGKDNE RDDIVENVNVRSCSFTGTQNGARIKTWNGGRGLAKNILYENITLIDAGYPIIINQHYFDNK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 343 Download |
| MFNFFFTMKD FKTLFSLIIV ISYYFEYGEG QRILSIKDFI IDTNHTIIDY SQAFQEAWKG 60 LCEDETPNGS ALVIRKNETY TLQPSTFRGP CVSSNIHIQI DGKLEGPRKP IYWKNKENRS 120 WLGFKDVEGL VINGSGVLNP HGEAWWKSVS LSKRPTTISF ASCMDIVYNG LHHINSPRNH 180 ISIYGCTNAT LSNLDISAPE DSPNTDGINI CLSHRIQILD SSIQTGDDCV AITGGRGGSS 240 DINITGVACG PGHGISIGSL GKDNERDDIV ENVNVRSCSF TGTQNGARIK TWNGGRGLAK 300 NILYENITLI DAGYPIIINQ HYFDNKKKHY FDKSFLKVIF KL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 9.0e-64 | 49 | 327 | 289 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-64 | 79 | 327 | 254 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-71 | 31 | 327 | 304 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-79 | 47 | 329 | 287 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 4.0e-86 | 49 | 327 | 279 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0012505 | endomembrane system |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_194963.2 | 0 | 1 | 342 | 1 | 342 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_194964.2 | 0 | 113 | 329 | 5 | 217 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 11 | 327 | 1 | 312 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680757.1 | 0 | 53 | 322 | 5 | 273 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324855.1 | 0 | 8 | 338 | 1 | 327 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-17 | 113 | 322 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-17 | 113 | 322 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-17 | 113 | 322 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-17 | 113 | 322 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-17 | 113 | 322 | 58 | 265 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CX192293 | 256 | 72 | 327 | 0 |
| EX314309 | 273 | 47 | 311 | 0 |
| CV538127 | 229 | 71 | 295 | 0 |
| CV536748 | 225 | 102 | 322 | 0 |
| DY961682 | 252 | 49 | 292 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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