| Basic Information | |
|---|---|
| Species | Arabidopsis thaliana |
| Cazyme ID | AT4G32375.1 |
| Family | GH28 |
| Protein Properties | Length: 487 Molecular Weight: 53315.4 Isoelectric Point: 8.4325 |
| Chromosome | Chromosome/Scaffold: 4 Start: 15628873 End: 15631596 |
| Description | polygalacturonase, putative, expressed |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 18 | 343 | 0 |
| VNGTTTSLVINANETYIVQPQLFQGPCASRNIHIQIDGKLEAPKMVREWGNYESKCWLCFTNVKGLVLNGSGILHPHGEAWWSSIEHSHRPRTIGFSGSS NILYNGLTQMNSPKNHISILDCTNVTLSNFHLIAPKDSPNTDGIDIAHSNNIRIFNSSIQTGDDCIAINGGSYDINITHVACGPGHGISIGSLGRYSVND TVQNVKIRHCSFNGTENGARIKTWTVRGGLGVAKNILYENITLTDTKYPIIIDQHYCNGGHNCTKEAMTAVKVSNVTFRYFTGTCANDIAIKLDCDEVTG CKDIVMEHINITSSSTKRPLTAYCQF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 487 Download |
| MVQMAFKEAW NALCEANVNG TTTSLVINAN ETYIVQPQLF QGPCASRNIH IQIDGKLEAP 60 KMVREWGNYE SKCWLCFTNV KGLVLNGSGI LHPHGEAWWS SIEHSHRPRT IGFSGSSNIL 120 YNGLTQMNSP KNHISILDCT NVTLSNFHLI APKDSPNTDG IDIAHSNNIR IFNSSIQTGD 180 DCIAINGGSY DINITHVACG PGHGISIGSL GRYSVNDTVQ NVKIRHCSFN GTENGARIKT 240 WTVRGGLGVA KNILYENITL TDTKYPIIID QHYCNGGHNC TKEAMTAVKV SNVTFRYFTG 300 TCANDIAIKL DCDEVTGCKD IVMEHINITS SSTKRPLTAY CQFADIISHF VSMKIKCDYY 360 EEPLVPVEPP QQVEPPTPTK PLAPAKPPRH VGPLMPTKPP TMFPKPLAPA KSPRHVELPM 420 PTKPPTMFPK PLAPAKPPRH VEPPMPTKPP TMFPKPLAPA KPPVYYAKPP APNAQPSMLS 480 FLSCLI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-70 | 5 | 347 | 352 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 9.0e-76 | 5 | 334 | 337 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-79 | 19 | 334 | 321 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03003 | PLN03003 | 2.0e-83 | 5 | 333 | 334 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 5.0e-106 | 5 | 345 | 344 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005575 | cellular_component |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA22564.1 | 5e-21 | 5 | 52 | 214 | 261 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA22564.1 | 0 | 52 | 486 | 8 | 503 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_194963.2 | 0 | 5 | 273 | 53 | 322 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_194964.2 | 0 | 62 | 403 | 1 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680757.1 | 0 | 1 | 486 | 1 | 486 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 6e-22 | 75 | 305 | 70 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 6e-22 | 75 | 305 | 70 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 6e-22 | 75 | 305 | 70 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 6e-22 | 75 | 305 | 70 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 6e-22 | 75 | 305 | 70 | 295 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV536748 | 262 | 55 | 312 | 0 |
| CV538127 | 229 | 17 | 241 | 0 |
| DR050772 | 291 | 52 | 328 | 0 |
| JZ195553 | 275 | 42 | 312 | 0 |
| CX192293 | 270 | 23 | 292 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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